On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
69.4
nTPM
HPA Brain:
352.4
nTPM
GTEx:
69.4
nTPM
FANTOM5:
203.0
Scaled Tags Per Million
Macaque:
87.8
nTPM
Mouse:
69.6
nTPM
Rat:
45.2
nTPM
Pig:
57.5
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
352.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 179.4
2828
Female, age 72, unknown
266.3
2586
Male, age 75, left hemisphere
247.2
2666
Male, age 74, left hemisphere
207.1
1827
Male, age 72, unknown
192.1
1870
Female, age 42, unknown
174.2
1833
Male, age 53, unknown
155.6
1830
Male, age 51, unknown
153.5
2219
Male, age 76, both hemispheres
145.0
2019
Male, age 18, unknown
135.0
2411
Female, age 72, unknown
117.7
Dorsal raphe nucleus nTPM: 229.0
2016
Female, age 72, unknown
343.9
1828
Male, age 53, unknown
246.4
2047
Male, age 72, unknown
225.5
2298
Female, age 72, unknown
195.2
2750
Male, age 76, both hemispheres
134.3
Inferior colliculus nTPM: 184.5
2849
Male, age 72, unknown
208.2
1890
Male, age 53, unknown
198.2
1848
Female, age 42, unknown
193.9
2097
Female, age 72, unknown
137.7
Median raphe nucleus nTPM: 166.7
2220
Male, age 76, midline
166.7
Periaquaductal grey, anterior nTPM: 226.7
1795
Male, age 51, unknown
294.6
1947
Male, age 18, unknown
201.5
2502
Female, age 75, unknown
184.0
Periaquaductal grey, dorsal nTPM: 280.9
2850
Male, age 76, both hemispheres
356.1
1831
Male, age 72, unknown
333.2
1840
Male, age 53, unknown
250.0
2464
Female, age 72, unknown
184.1
Periaquaductal grey, lateral nTPM: 352.4
2053
Male, age 18, unknown
357.3
2140
Male, age 76, both hemispheres
356.1
2272
Male, age 74, both hemispheres
343.8
Pretectal area nTPM: 241.6
2273
Male, age 74, both hemispheres
446.6
2407
Male, age 75, both hemispheres
339.0
2825
Male, age 18, unknown
250.3
2224
Female, age 72, unknown
243.5
2316
Male, age 76, right hemisphere
234.5
2667
Female, age 75, unknown
228.1
1944
Female, age 72, unknown
214.3
1815
Male, age 53, unknown
204.7
1816
Male, age 51, unknown
202.6
1817
Female, age 42, unknown
168.6
2007
Male, age 72, unknown
125.1
Red nucleus nTPM: 150.6
2725
Female, age 75, unknown
215.1
2823
Male, age 76, right hemisphere
173.4
1865
Male, age 51, unknown
157.4
2584
Male, age 75, left hemisphere
151.7
1954
Female, age 42, unknown
146.4
2227
Male, age 72, unknown
145.6
2503
Female, age 72, unknown
139.9
1904
Male, age 53, unknown
138.9
2769
Male, age 72, unknown
137.7
1821
Female, age 72, unknown
137.4
2588
Male, age 74, left hemisphere
132.2
2785
Male, age 18, unknown
131.3
Substantia nigra nTPM: 199.1
2699
Male, age 18, unknown
304.8
2590
Female, age 75, unknown
227.8
2583
Male, age 75, right hemisphere
220.1
1851
Male, age 51, unknown
194.9
1941
Male, age 53, unknown
183.4
2665
Male, age 74, both hemispheres
182.8
1916
Female, age 42, unknown
181.8
2409
Female, age 72, unknown
173.5
2241
Male, age 72, unknown
165.9
1889
Female, age 72, unknown
155.8
Superior colliculus nTPM: 244.1
1995
Male, age 72, unknown
354.2
2664
Male, age 75, both hemispheres
317.8
1913
Female, age 42, unknown
309.4
2587
Male, age 74, left hemisphere
251.3
2087
Female, age 72, unknown
237.2
1796
Male, age 53, unknown
228.2
2261
Male, age 18, unknown
220.3
1839
Male, age 51, unknown
201.6
2668
Female, age 75, unknown
170.5
1895
Male, age 76, right hemisphere
150.2
Ventral tegmental area nTPM: 211.7
2021
Male, age 53, unknown
273.8
1915
Female, age 42, unknown
224.6
1942
Male, age 51, unknown
223.8
2223
Female, age 72, unknown
209.4
2218
Male, age 76, both hemispheres
192.7
2410
Female, age 72, unknown
146.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
69.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 69.4
Samples: 183
Max nTPM: 157.9
Min nTPM: 18.8
Std nTPM: 29.7
Median nTPM: 68.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
157.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
142.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
141.7
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
141.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
139.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
135.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
130.4
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
129.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
128.1
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
127.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
127.4
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
124.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
124.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
122.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
120.5
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
117.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
116.2
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
112.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
111.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
110.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
109.0
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
109.0
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
107.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
106.6
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
105.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
103.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
102.7
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
102.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
101.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
100.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
100.6
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
99.8
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
99.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
98.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
98.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
98.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
94.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
94.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
93.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
93.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
93.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
91.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
91.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
89.9
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
88.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
87.8
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
87.2
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
87.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
87.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
85.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
85.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
84.0
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
81.1
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
80.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
79.5
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
79.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
78.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
78.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
77.2
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
77.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
77.1
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
76.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
76.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
76.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
75.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
75.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
74.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
74.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
74.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
73.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
73.5
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
73.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
72.6
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
72.4
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
72.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
71.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
71.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
71.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
70.6
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
70.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
70.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
69.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
68.9
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
68.9
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
68.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
68.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
68.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
68.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
68.1
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
68.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
68.1
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
68.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
68.0
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
67.9
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
67.6
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
65.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
65.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
65.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
64.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
63.3
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
63.2
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
62.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
61.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
60.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
59.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
58.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
58.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
58.1
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
58.0
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
57.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
56.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
56.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
56.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
56.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
53.3
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
52.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
52.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
52.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
52.5
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
52.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
51.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
51.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
51.2
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
51.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
50.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
50.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
50.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
48.9
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
48.7
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
47.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
46.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
46.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
46.8
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
46.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
46.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
45.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
44.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
44.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
44.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
44.1
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
44.0
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
43.5
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
43.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
43.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
42.6
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
42.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
42.1
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
42.1
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
41.9
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
41.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
41.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
40.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
40.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
40.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
39.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
38.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
38.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
38.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
38.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
36.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
36.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
35.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
34.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
34.2
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
34.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
34.1
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
33.7
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
33.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
33.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
32.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
32.2
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
31.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
30.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
30.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
27.6
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
27.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
26.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
26.0
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
25.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
25.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
24.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
24.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
18.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
87.8
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 62.5
Samples: 1
Max nTPM: 62.5
Min nTPM: 62.5
Sample A
62.5
Midbrain nTPM: 87.8
Samples: 1
Max nTPM: 87.8
Min nTPM: 87.8
Sample A
87.8
Superior colliculi nTPM: 74.7
Samples: 1
Max nTPM: 74.7
Min nTPM: 74.7
Sample A
74.7
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
57.5
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 55.9
Samples: 3
Max nTPM: 71.9
Min nTPM: 46.8
Sample A
Female
46.8
Sample B
Female
71.9
Sample C
Male
49.1
Midbrain nTPM: 42.1
Samples: 3
Max nTPM: 62.2
Min nTPM: 28.9
Sample B
Female
28.9
Sample C
Male
62.2
Sample D
Male
35.2
Periaqueductal gray nTPM: 50.7
Samples: 3
Max nTPM: 58.1
Min nTPM: 41.1
Sample B
Female
41.1
Sample C
Male
58.1
Sample D
Male
52.8
Superior colliculi nTPM: 57.5
Samples: 4
Max nTPM: 81.6
Min nTPM: 45.3
Sample A
Female
45.3
Sample B
Female
81.6
Sample C
Male
52.0
Sample D
Male
51.2
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
69.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 69.6
Samples: 4
Max nTPM: 75.7
Min nTPM: 63.3
Sample A
64.0
Sample B
63.3
Sample C
75.3
Sample D
75.7
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
45.2
Rat sample
Sample description
nTPM
Midbrain nTPM: 45.2
Samples: 4
Max nTPM: 47.6
Min nTPM: 41.6
Sample A
47.6
Sample A
44.9
Sample A
41.6
Sample A
46.8
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The Human Protein Atlas project is funded
