A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13.6
nTPM
Monaco:
86.6
nTPM
Schmiedel:
127.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.6
HPA sample
nTPM
Memory B-cell nTPM: 13.5
Samples: 6
Max nTPM: 26.3
Min nTPM: 6.1
P10809_1017
15.4
P10809_1025
12.8
P10809_1044
26.3
P10809_1063
11.3
P10809_1092
9.4
P10809_1105
6.1
Naive B-cell nTPM: 13.1
Samples: 6
Max nTPM: 18.3
Min nTPM: 7.5
P10809_1011
15.0
P10809_1029
18.3
P10809_1048
14.5
P10809_1067
7.5
P10809_1091
14.3
P10809_1104
9.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
86.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 71.9
Samples: 4
Max nTPM: 99.5
Min nTPM: 61.1
RHH5310_R3677
61.2
RHH5218_R3590
65.9
RHH5247_R3619
61.1
RHH5276_R3648
99.5
Naive B-cell nTPM: 86.7
Samples: 4
Max nTPM: 131.4
Min nTPM: 34.6
RHH5308_R3675
96.5
RHH5216_R3588
34.6
RHH5245_R3617
131.4
RHH5274_R3646
84.1
Non-switched memory B-cell nTPM: 67.5
Samples: 4
Max nTPM: 80.7
Min nTPM: 51.4
RHH5309_R3676
51.4
RHH5217_R3589
80.7
RHH5246_R3618
69.6
RHH5275_R3647
68.3
Plasmablast nTPM: 67.7
Samples: 4
Max nTPM: 87.5
Min nTPM: 52.0
RHH5312_R3679
87.5
RHH5220_R3592
58.9
RHH5249_R3621
52.0
RHH5278_R3650
72.5
Switched memory B-cell nTPM: 64.3
Samples: 4
Max nTPM: 79.7
Min nTPM: 46.0
RHH5311_R3678
46.0
RHH5219_R3591
53.4
RHH5248_R3620
79.7
RHH5277_R3649
78.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
127.6
Schmiedel sample id
TPM
Naive B-cell TPM: 127.6
Samples: 91
Max TPM: 175.8
Min TPM: 97.9
B_CELL_NAIVE_1
175.8
B_CELL_NAIVE_2
168.6
B_CELL_NAIVE_3
163.3
B_CELL_NAIVE_4
162.7
B_CELL_NAIVE_5
161.4
B_CELL_NAIVE_6
160.3
B_CELL_NAIVE_7
153.7
B_CELL_NAIVE_8
151.6
B_CELL_NAIVE_9
145.1
B_CELL_NAIVE_10
143.9
B_CELL_NAIVE_11
143.6
B_CELL_NAIVE_12
143.5
B_CELL_NAIVE_13
142.5
B_CELL_NAIVE_14
142.4
B_CELL_NAIVE_15
141.9
B_CELL_NAIVE_16
139.5
B_CELL_NAIVE_17
138.8
B_CELL_NAIVE_18
137.7
B_CELL_NAIVE_19
137.7
B_CELL_NAIVE_20
137.4
B_CELL_NAIVE_21
135.4
B_CELL_NAIVE_22
134.9
B_CELL_NAIVE_23
134.2
B_CELL_NAIVE_24
133.7
B_CELL_NAIVE_25
133.5
B_CELL_NAIVE_26
132.3
B_CELL_NAIVE_27
132.1
B_CELL_NAIVE_28
132.1
B_CELL_NAIVE_29
131.4
B_CELL_NAIVE_30
131.1
B_CELL_NAIVE_31
130.6
B_CELL_NAIVE_32
130.2
B_CELL_NAIVE_33
129.9
B_CELL_NAIVE_34
129.5
B_CELL_NAIVE_35
129.4
B_CELL_NAIVE_36
129.4
B_CELL_NAIVE_37
129.1
B_CELL_NAIVE_38
128.9
B_CELL_NAIVE_39
128.0
B_CELL_NAIVE_40
127.2
B_CELL_NAIVE_41
127.1
B_CELL_NAIVE_42
127.0
B_CELL_NAIVE_43
126.9
B_CELL_NAIVE_44
126.5
B_CELL_NAIVE_45
126.4
B_CELL_NAIVE_46
126.0
B_CELL_NAIVE_47
125.8
B_CELL_NAIVE_48
125.7
B_CELL_NAIVE_49
125.2
B_CELL_NAIVE_50
124.7
B_CELL_NAIVE_51
124.5
B_CELL_NAIVE_52
123.9
B_CELL_NAIVE_53
123.8
B_CELL_NAIVE_54
123.4
B_CELL_NAIVE_55
123.2
B_CELL_NAIVE_56
122.6
B_CELL_NAIVE_57
122.2
B_CELL_NAIVE_58
121.2
B_CELL_NAIVE_59
120.3
B_CELL_NAIVE_60
120.1
B_CELL_NAIVE_61
119.9
B_CELL_NAIVE_62
119.5
B_CELL_NAIVE_63
119.3
B_CELL_NAIVE_64
119.3
B_CELL_NAIVE_65
119.0
B_CELL_NAIVE_66
118.5
B_CELL_NAIVE_67
117.7
B_CELL_NAIVE_68
117.4
B_CELL_NAIVE_69
117.3
B_CELL_NAIVE_70
117.2
B_CELL_NAIVE_71
116.6
B_CELL_NAIVE_72
116.4
B_CELL_NAIVE_73
115.5
B_CELL_NAIVE_74
115.3
B_CELL_NAIVE_75
115.2
B_CELL_NAIVE_76
115.0
B_CELL_NAIVE_77
114.4
B_CELL_NAIVE_78
114.2
B_CELL_NAIVE_79
113.5
B_CELL_NAIVE_80
113.5
B_CELL_NAIVE_81
112.0
B_CELL_NAIVE_82
110.7
B_CELL_NAIVE_83
109.5
B_CELL_NAIVE_84
109.2
B_CELL_NAIVE_85
108.8
B_CELL_NAIVE_86
108.5
B_CELL_NAIVE_87
107.2
B_CELL_NAIVE_88
106.7
B_CELL_NAIVE_89
105.3
B_CELL_NAIVE_90
104.2
B_CELL_NAIVE_91
97.9
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