A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.1
nTPM
Monaco:
98.2
nTPM
Schmiedel:
110.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.1
HPA sample
nTPM
NK-cell nTPM: 16.1
Samples: 6
Max nTPM: 36.7
Min nTPM: 4.1
P10809_1013
13.9
P10809_1033
23.4
P10809_1052
13.4
P10809_1071
4.1
P10809_1093
36.7
P10809_1103
5.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
98.2
Monaco sample
nTPM
NK-cell nTPM: 98.3
Samples: 4
Max nTPM: 138.4
Min nTPM: 72.9
RHH5316_R3683
108.2
RHH5224_R3596
73.5
RHH5253_R3625
138.4
RHH5282_R3654
72.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
110.7
Schmiedel sample id
TPM
NK-cell TPM: 110.7
Samples: 90
Max TPM: 159.7
Min TPM: 76.1
NK_1
159.7
NK_2
153.4
NK_3
150.9
NK_4
149.8
NK_5
146.6
NK_6
145.1
NK_7
142.1
NK_8
139.4
NK_9
136.5
NK_10
133.0
NK_11
132.2
NK_12
130.3
NK_13
129.9
NK_14
128.9
NK_15
128.6
NK_16
126.0
NK_17
125.8
NK_18
124.9
NK_19
124.9
NK_20
124.6
NK_21
124.2
NK_22
124.1
NK_23
123.7
NK_24
123.4
NK_25
122.0
NK_26
118.2
NK_27
117.9
NK_28
117.7
NK_29
117.6
NK_30
117.5
NK_31
117.4
NK_32
116.9
NK_33
116.9
NK_34
115.6
NK_35
114.3
NK_36
114.1
NK_37
112.6
NK_38
112.6
NK_39
111.9
NK_40
111.9
NK_41
111.8
NK_42
111.4
NK_43
111.4
NK_44
111.2
NK_45
110.9
NK_46
110.4
NK_47
107.8
NK_48
107.0
NK_49
107.0
NK_50
106.9
NK_51
105.8
NK_52
105.8
NK_53
105.5
NK_54
105.1
NK_55
105.0
NK_56
104.9
NK_57
104.8
NK_58
104.3
NK_59
104.1
NK_60
103.4
NK_61
102.3
NK_62
101.4
NK_63
101.3
NK_64
101.1
NK_65
100.4
NK_66
99.6
NK_67
99.2
NK_68
98.2
NK_69
97.9
NK_70
95.5
NK_71
95.3
NK_72
94.6
NK_73
92.9
NK_74
92.7
NK_75
92.5
NK_76
92.4
NK_77
92.2
NK_78
89.8
NK_79
89.3
NK_80
86.8
NK_81
86.1
NK_82
85.6
NK_83
84.1
NK_84
84.0
NK_85
83.9
NK_86
81.8
NK_87
80.7
NK_88
79.6
NK_89
79.3
NK_90
76.1
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