A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.8
nTPM
Monaco:
116.1
nTPM
Schmiedel:
135.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.8
HPA sample
nTPM
Classical monocyte nTPM: 11.5
Samples: 6
Max nTPM: 21.1
Min nTPM: 7.7
P10809_1003
21.1
P10809_1020
9.9
P10809_1039
13.2
P10809_1058
8.0
P10809_1080
9.4
P10809_1107
7.7
Intermediate monocyte nTPM: 15.8
Samples: 6
Max nTPM: 33.1
Min nTPM: 8.5
P10809_1004
21.8
P10809_1023
10.8
P10809_1042
10.8
P10809_1061
33.1
P10809_1081
8.5
P10809_1108
10.0
Non-classical monocyte nTPM: 14.7
Samples: 5
Max nTPM: 22.3
Min nTPM: 8.4
P10809_1005
22.3
P10809_1053
8.4
P10809_1072
21.2
P10809_1082
10.7
P10809_1109
10.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
116.1
Monaco sample
nTPM
Classical monocyte nTPM: 86.0
Samples: 4
Max nTPM: 89.2
Min nTPM: 83.2
RHH5313_R3680
84.0
RHH5221_R3593
83.2
RHH5250_R3622
87.7
RHH5279_R3651
89.2
Intermediate monocyte nTPM: 97.5
Samples: 4
Max nTPM: 102.7
Min nTPM: 91.2
RHH5314_R3681
102.7
RHH5222_R3594
94.4
RHH5251_R3623
91.2
RHH5280_R3652
101.7
Non-classical monocyte nTPM: 116.1
Samples: 4
Max nTPM: 135.5
Min nTPM: 84.2
RHH5315_R3682
135.5
RHH5223_R3595
120.0
RHH5252_R3624
124.5
RHH5281_R3653
84.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
135.9
Schmiedel sample id
TPM
Classical monocyte TPM: 72.3
Samples: 91
Max TPM: 92.6
Min TPM: 50.3
MONOCYTES_1
92.6
MONOCYTES_2
89.3
MONOCYTES_3
89.0
MONOCYTES_4
88.6
MONOCYTES_5
87.3
MONOCYTES_6
86.4
MONOCYTES_7
85.9
MONOCYTES_8
84.3
MONOCYTES_9
84.2
MONOCYTES_10
84.2
MONOCYTES_11
83.9
MONOCYTES_12
83.7
MONOCYTES_13
83.3
MONOCYTES_14
82.9
MONOCYTES_15
82.5
MONOCYTES_16
82.0
MONOCYTES_17
81.2
MONOCYTES_18
81.2
MONOCYTES_19
81.0
MONOCYTES_20
80.5
MONOCYTES_21
80.4
MONOCYTES_22
80.0
MONOCYTES_23
79.6
MONOCYTES_24
79.6
MONOCYTES_25
78.9
MONOCYTES_26
78.5
MONOCYTES_27
78.1
MONOCYTES_28
77.4
MONOCYTES_29
77.3
MONOCYTES_30
77.2
MONOCYTES_31
76.7
MONOCYTES_32
76.5
MONOCYTES_33
76.2
MONOCYTES_34
76.0
MONOCYTES_35
76.0
MONOCYTES_36
74.0
MONOCYTES_37
74.0
MONOCYTES_38
73.7
MONOCYTES_39
73.2
MONOCYTES_40
73.2
MONOCYTES_41
72.4
MONOCYTES_42
72.2
MONOCYTES_43
72.1
MONOCYTES_44
71.8
MONOCYTES_45
71.1
MONOCYTES_46
70.6
MONOCYTES_47
70.6
MONOCYTES_48
70.3
MONOCYTES_49
70.2
MONOCYTES_50
70.0
MONOCYTES_51
69.8
MONOCYTES_52
69.8
MONOCYTES_53
69.5
MONOCYTES_54
69.2
MONOCYTES_55
68.9
MONOCYTES_56
68.6
MONOCYTES_57
68.6
MONOCYTES_58
68.3
MONOCYTES_59
67.5
MONOCYTES_60
67.3
MONOCYTES_61
67.1
MONOCYTES_62
67.0
MONOCYTES_63
66.8
MONOCYTES_64
66.7
MONOCYTES_65
66.6
MONOCYTES_66
66.2
MONOCYTES_67
65.9
MONOCYTES_68
65.9
MONOCYTES_69
65.5
MONOCYTES_70
65.1
MONOCYTES_71
65.0
MONOCYTES_72
64.9
MONOCYTES_73
64.6
MONOCYTES_74
64.3
MONOCYTES_75
64.2
MONOCYTES_76
64.2
MONOCYTES_77
64.1
MONOCYTES_78
64.0
MONOCYTES_79
63.4
MONOCYTES_80
62.6
MONOCYTES_81
62.4
MONOCYTES_82
62.1
MONOCYTES_83
61.5
MONOCYTES_84
60.8
MONOCYTES_85
60.7
MONOCYTES_86
60.2
MONOCYTES_87
60.0
MONOCYTES_88
60.0
MONOCYTES_89
56.9
MONOCYTES_90
52.5
MONOCYTES_91
50.3
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Non-classical monocyte TPM: 135.9
Samples: 90
Max TPM: 182.9
Min TPM: 101.7
M2_1
182.9
M2_2
178.5
M2_3
177.8
M2_4
176.6
M2_5
175.1
M2_6
170.1
M2_7
166.3
M2_8
165.2
M2_9
164.2
M2_10
163.4
M2_11
163.1
M2_12
159.4
M2_13
159.4
M2_14
158.7
M2_15
158.1
M2_16
157.8
M2_17
157.0
M2_18
152.9
M2_19
151.6
M2_20
150.1
M2_21
148.2
M2_22
148.2
M2_23
148.0
M2_24
146.3
M2_25
145.6
M2_26
145.0
M2_27
144.0
M2_28
142.3
M2_29
141.9
M2_30
141.0
M2_31
140.9
M2_32
140.6
M2_33
140.5
M2_34
137.9
M2_35
137.6
M2_36
137.0
M2_37
136.7
M2_38
136.3
M2_39
136.0
M2_40
135.8
M2_41
134.8
M2_42
134.7
M2_43
134.5
M2_44
133.4
M2_45
132.3
M2_46
131.2
M2_47
131.1
M2_48
130.6
M2_49
129.8
M2_50
129.1
M2_51
128.8
M2_52
128.7
M2_53
128.6
M2_54
128.4
M2_55
128.0
M2_56
127.8
M2_57
127.5
M2_58
127.1
M2_59
126.8
M2_60
126.8
M2_61
126.7
M2_62
126.6
M2_63
125.7
M2_64
125.6
M2_65
124.9
M2_66
124.7
M2_67
124.7
M2_68
124.5
M2_69
124.5
M2_70
122.5
M2_71
121.9
M2_72
121.3
M2_73
121.1
M2_74
120.8
M2_75
120.7
M2_76
119.4
M2_77
118.4
M2_78
117.3
M2_79
117.1
M2_80
114.8
M2_81
114.8
M2_82
110.8
M2_83
110.6
M2_84
109.7
M2_85
108.4
M2_86
105.4
M2_87
104.2
M2_88
104.0
M2_89
104.0
M2_90
101.7
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