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  • FKBP5
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:20.7 nTPM
HPA Brain:31.2 nTPM
GTEx:20.7 nTPM
FANTOM5:86.5 Scaled Tags Per Million
Pig:22.5 nTPM
Mouse:22.4 nTPM
Allen mouse:8.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

31.2
Sample id Sample description nTPM
Amygdala
nTPM: 31.2
2814 Male, age 76, right hemisphere 36.9
2695 Female, age 67, right hemisphere 36.6
2514 Male, age 75, right hemisphere 31.4
1987 Female, age 91, left hemisphere 29.2
2517 Female, age 94, left hemisphere 22.0
Basal amygdala
nTPM: 28.8
2609 Male, age 75, right hemisphere 39.0
1955 Male, age 76, both hemispheres 31.7
2110 Male, age 80, left hemisphere 29.4
2243 Female, age 91, right hemisphere 29.1
2827 Female, age 67, right hemisphere 22.3
2685 Female, age 94, left hemisphere 21.2
Central amygdala
nTPM: 30.6
2515 Male, age 75, right hemisphere 35.4
1905 Male, age 76, both hemispheres 35.2
2701 Female, age 91, right hemisphere 32.0
2239 Male, age 80, left hemisphere 27.8
2826 Female, age 94, left hemisphere 22.8
Corticomedial amygdala
nTPM: 30.3
2428 Male, age 75, right hemisphere 35.9
2240 Male, age 76, both hemispheres 34.8
2429 Female, age 94, left hemisphere 29.7
2242 Female, age 91, right hemisphere 27.3
2535 Female, age 67, right hemisphere 27.0
2829 Male, age 80, left hemisphere 27.0
Lateral amygdala
nTPM: 26.5
1883 Male, age 76, both hemispheres 31.9
2516 Male, age 75, right hemisphere 31.0
2256 Male, age 80, left hemisphere 27.6
2255 Female, age 91, right hemisphere 26.4
2830 Female, age 67, right hemisphere 22.8
2534 Female, age 94, left hemisphere 19.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

20.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 20.7
Samples: 181

Max nTPM: 85.8
Min nTPM: 2.3
Std nTPM: 16.7
Median nTPM: 13.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 85.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 79.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 70.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 66.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 63.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 56.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 55.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 55.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 54.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 52.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 52.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 52.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 52.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 52.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 51.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 50.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 49.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 48.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 47.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 47.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 47.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 47.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 47.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 44.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 43.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 43.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 40.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 40.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 40.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 38.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 38.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 36.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 35.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 34.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 33.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 33.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 33.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 32.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 31.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 31.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 30.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 28.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 28.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 28.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 27.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 27.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 27.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 26.9
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 26.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 26.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 24.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 23.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 23.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 23.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 23.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 23.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 22.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 22.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 22.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 21.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 21.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 20.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 20.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 20.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 19.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 19.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 19.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 19.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 19.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 19.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 19.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 18.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 18.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 18.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 18.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 18.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 18.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 17.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 17.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 16.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 16.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 16.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 15.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 15.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 14.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 14.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 14.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 14.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 14.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 13.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 13.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 13.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 13.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 13.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 13.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 13.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 13.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 13.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 13.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 12.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 12.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 12.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 12.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 12.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 12.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 12.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 12.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 12.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 12.0
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 11.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 11.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 11.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 11.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 10.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 10.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 10.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 10.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 10.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 10.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 10.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 10.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 9.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 9.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 9.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 9.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 9.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 9.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 9.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 9.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 9.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 9.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 8.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 8.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 8.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 8.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 8.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 8.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 8.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 8.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 8.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 8.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 8.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 7.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 7.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 7.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 7.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 7.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 7.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 7.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 7.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 6.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 6.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 6.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 6.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 6.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 6.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 6.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 6.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 6.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 5.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 5.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 5.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 5.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 5.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 5.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 5.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 5.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 5.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 5.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 4.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 4.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 4.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 4.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 4.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 3.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 3.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 3.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 3.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 3.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 3.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 2.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

86.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 86.5
FF:10151-102I7 76 years, female 86.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.5
Pig sample Sample description nTPM
Amygdala
nTPM: 22.5
Samples: 4

Max nTPM: 32.8
Min nTPM: 16.2
Sample A Female 16.2
Sample B Female 32.8
Sample C Male 20.6
Sample D Male 20.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 22.4
Samples: 4

Max nTPM: 25.3
Min nTPM: 18.6
Sample A Male 20.9
Sample B Male 18.6
Sample C Female 25.3
Sample D Female 24.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

8.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 8.5
70525820 Antisense, RP_050317_04_G06, Mouse strain C57BL/6J (56 days, male) 8.5

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