A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
36.9
nTPM
Monaco:
264.1
nTPM
Schmiedel:
75.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.9
HPA sample
nTPM
Memory B-cell nTPM: 36.9
Samples: 6
Max nTPM: 45.3
Min nTPM: 21.8
P10809_1017
42.7
P10809_1025
39.4
P10809_1044
21.8
P10809_1063
35.0
P10809_1092
45.3
P10809_1105
37.3
Naive B-cell nTPM: 35.4
Samples: 6
Max nTPM: 54.9
Min nTPM: 24.2
P10809_1011
24.2
P10809_1029
37.2
P10809_1048
54.9
P10809_1067
28.2
P10809_1091
34.4
P10809_1104
33.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
264.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 104.2
Samples: 4
Max nTPM: 133.3
Min nTPM: 72.9
RHH5310_R3677
133.3
RHH5218_R3590
106.3
RHH5247_R3619
72.9
RHH5276_R3648
104.3
Naive B-cell nTPM: 80.0
Samples: 4
Max nTPM: 109.8
Min nTPM: 66.0
RHH5308_R3675
73.6
RHH5216_R3588
109.8
RHH5245_R3617
66.0
RHH5274_R3646
70.6
Non-switched memory B-cell nTPM: 88.1
Samples: 4
Max nTPM: 96.9
Min nTPM: 71.8
RHH5309_R3676
88.1
RHH5217_R3589
96.9
RHH5246_R3618
95.7
RHH5275_R3647
71.8
Plasmablast nTPM: 264.1
Samples: 4
Max nTPM: 295.4
Min nTPM: 234.6
RHH5312_R3679
266.4
RHH5220_R3592
260.0
RHH5249_R3621
295.4
RHH5278_R3650
234.6
Switched memory B-cell nTPM: 108.5
Samples: 4
Max nTPM: 126.2
Min nTPM: 82.2
RHH5311_R3678
126.2
RHH5219_R3591
111.3
RHH5248_R3620
114.3
RHH5277_R3649
82.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
75.5
Schmiedel sample id
TPM
Naive B-cell TPM: 75.5
Samples: 91
Max TPM: 114.5
Min TPM: 56.4
B_CELL_NAIVE_1
114.5
B_CELL_NAIVE_2
113.2
B_CELL_NAIVE_3
108.5
B_CELL_NAIVE_4
107.3
B_CELL_NAIVE_5
97.9
B_CELL_NAIVE_6
96.7
B_CELL_NAIVE_7
96.2
B_CELL_NAIVE_8
92.8
B_CELL_NAIVE_9
91.7
B_CELL_NAIVE_10
90.8
B_CELL_NAIVE_11
88.7
B_CELL_NAIVE_12
86.3
B_CELL_NAIVE_13
85.3
B_CELL_NAIVE_14
85.0
B_CELL_NAIVE_15
84.9
B_CELL_NAIVE_16
84.6
B_CELL_NAIVE_17
84.5
B_CELL_NAIVE_18
84.0
B_CELL_NAIVE_19
83.8
B_CELL_NAIVE_20
83.3
B_CELL_NAIVE_21
83.1
B_CELL_NAIVE_22
83.0
B_CELL_NAIVE_23
82.0
B_CELL_NAIVE_24
81.4
B_CELL_NAIVE_25
80.6
B_CELL_NAIVE_26
80.4
B_CELL_NAIVE_27
80.0
B_CELL_NAIVE_28
79.7
B_CELL_NAIVE_29
79.6
B_CELL_NAIVE_30
79.3
B_CELL_NAIVE_31
78.7
B_CELL_NAIVE_32
78.6
B_CELL_NAIVE_33
78.6
B_CELL_NAIVE_34
78.3
B_CELL_NAIVE_35
77.6
B_CELL_NAIVE_36
77.3
B_CELL_NAIVE_37
77.1
B_CELL_NAIVE_38
77.0
B_CELL_NAIVE_39
76.5
B_CELL_NAIVE_40
76.4
B_CELL_NAIVE_41
76.3
B_CELL_NAIVE_42
76.3
B_CELL_NAIVE_43
75.5
B_CELL_NAIVE_44
75.3
B_CELL_NAIVE_45
74.7
B_CELL_NAIVE_46
74.1
B_CELL_NAIVE_47
73.7
B_CELL_NAIVE_48
73.7
B_CELL_NAIVE_49
73.7
B_CELL_NAIVE_50
73.5
B_CELL_NAIVE_51
73.0
B_CELL_NAIVE_52
72.6
B_CELL_NAIVE_53
72.5
B_CELL_NAIVE_54
72.3
B_CELL_NAIVE_55
72.0
B_CELL_NAIVE_56
72.0
B_CELL_NAIVE_57
71.9
B_CELL_NAIVE_58
71.9
B_CELL_NAIVE_59
71.0
B_CELL_NAIVE_60
70.3
B_CELL_NAIVE_61
70.1
B_CELL_NAIVE_62
69.3
B_CELL_NAIVE_63
69.2
B_CELL_NAIVE_64
69.0
B_CELL_NAIVE_65
68.9
B_CELL_NAIVE_66
68.1
B_CELL_NAIVE_67
66.4
B_CELL_NAIVE_68
66.4
B_CELL_NAIVE_69
66.0
B_CELL_NAIVE_70
65.9
B_CELL_NAIVE_71
65.7
B_CELL_NAIVE_72
65.5
B_CELL_NAIVE_73
65.3
B_CELL_NAIVE_74
63.6
B_CELL_NAIVE_75
63.6
B_CELL_NAIVE_76
62.1
B_CELL_NAIVE_77
61.7
B_CELL_NAIVE_78
61.7
B_CELL_NAIVE_79
61.2
B_CELL_NAIVE_80
61.2
B_CELL_NAIVE_81
61.0
B_CELL_NAIVE_82
60.2
B_CELL_NAIVE_83
60.1
B_CELL_NAIVE_84
59.9
B_CELL_NAIVE_85
59.8
B_CELL_NAIVE_86
58.8
B_CELL_NAIVE_87
58.2
B_CELL_NAIVE_88
58.2
B_CELL_NAIVE_89
57.9
B_CELL_NAIVE_90
57.7
B_CELL_NAIVE_91
56.4
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