A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
77.4
nTPM
Monaco:
193.0
nTPM
Schmiedel:
117.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
77.4
HPA sample
nTPM
Classical monocyte nTPM: 59.1
Samples: 6
Max nTPM: 68.5
Min nTPM: 49.0
P10809_1003
56.5
P10809_1020
67.2
P10809_1039
68.5
P10809_1058
59.3
P10809_1080
49.0
P10809_1107
54.2
Intermediate monocyte nTPM: 64.6
Samples: 6
Max nTPM: 80.9
Min nTPM: 51.4
P10809_1004
51.4
P10809_1023
75.0
P10809_1042
80.9
P10809_1061
61.1
P10809_1081
54.7
P10809_1108
64.4
Non-classical monocyte nTPM: 77.4
Samples: 5
Max nTPM: 108.9
Min nTPM: 56.3
P10809_1005
65.4
P10809_1053
80.2
P10809_1072
108.9
P10809_1082
56.3
P10809_1109
76.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
193.0
Monaco sample
nTPM
Classical monocyte nTPM: 190.6
Samples: 4
Max nTPM: 225.8
Min nTPM: 161.7
RHH5313_R3680
161.7
RHH5221_R3593
175.0
RHH5250_R3622
225.8
RHH5279_R3651
199.8
Intermediate monocyte nTPM: 168.1
Samples: 4
Max nTPM: 192.2
Min nTPM: 149.8
RHH5314_R3681
166.7
RHH5222_R3594
149.8
RHH5251_R3623
163.9
RHH5280_R3652
192.2
Non-classical monocyte nTPM: 193.0
Samples: 4
Max nTPM: 218.3
Min nTPM: 172.4
RHH5315_R3682
172.4
RHH5223_R3595
188.6
RHH5252_R3624
192.8
RHH5281_R3653
218.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
117.1
Schmiedel sample id
TPM
Classical monocyte TPM: 83.1
Samples: 91
Max TPM: 111.3
Min TPM: 58.0
MONOCYTES_1
111.3
MONOCYTES_2
107.2
MONOCYTES_3
103.2
MONOCYTES_4
103.0
MONOCYTES_5
100.8
MONOCYTES_6
100.7
MONOCYTES_7
98.6
MONOCYTES_8
97.4
MONOCYTES_9
97.2
MONOCYTES_10
96.3
MONOCYTES_11
95.9
MONOCYTES_12
95.8
MONOCYTES_13
95.5
MONOCYTES_14
94.3
MONOCYTES_15
94.0
MONOCYTES_16
93.5
MONOCYTES_17
93.5
MONOCYTES_18
92.9
MONOCYTES_19
92.8
MONOCYTES_20
92.2
MONOCYTES_21
92.2
MONOCYTES_22
91.9
MONOCYTES_23
91.3
MONOCYTES_24
90.3
MONOCYTES_25
90.2
MONOCYTES_26
89.6
MONOCYTES_27
88.6
MONOCYTES_28
88.3
MONOCYTES_29
87.9
MONOCYTES_30
87.7
MONOCYTES_31
86.8
MONOCYTES_32
86.8
MONOCYTES_33
86.8
MONOCYTES_34
86.8
MONOCYTES_35
86.8
MONOCYTES_36
86.6
MONOCYTES_37
85.9
MONOCYTES_38
85.5
MONOCYTES_39
85.2
MONOCYTES_40
84.4
MONOCYTES_41
83.9
MONOCYTES_42
83.6
MONOCYTES_43
83.3
MONOCYTES_44
82.7
MONOCYTES_45
82.3
MONOCYTES_46
82.3
MONOCYTES_47
82.2
MONOCYTES_48
82.0
MONOCYTES_49
81.8
MONOCYTES_50
81.5
MONOCYTES_51
81.3
MONOCYTES_52
81.0
MONOCYTES_53
80.7
MONOCYTES_54
80.5
MONOCYTES_55
80.4
MONOCYTES_56
80.3
MONOCYTES_57
80.0
MONOCYTES_58
79.8
MONOCYTES_59
78.1
MONOCYTES_60
78.0
MONOCYTES_61
77.7
MONOCYTES_62
77.1
MONOCYTES_63
76.3
MONOCYTES_64
76.2
MONOCYTES_65
76.2
MONOCYTES_66
75.8
MONOCYTES_67
75.7
MONOCYTES_68
75.7
MONOCYTES_69
75.4
MONOCYTES_70
74.5
MONOCYTES_71
74.2
MONOCYTES_72
74.0
MONOCYTES_73
73.2
MONOCYTES_74
72.9
MONOCYTES_75
72.9
MONOCYTES_76
72.7
MONOCYTES_77
72.5
MONOCYTES_78
72.1
MONOCYTES_79
71.8
MONOCYTES_80
71.7
MONOCYTES_81
71.4
MONOCYTES_82
70.1
MONOCYTES_83
69.5
MONOCYTES_84
69.1
MONOCYTES_85
68.5
MONOCYTES_86
67.1
MONOCYTES_87
66.1
MONOCYTES_88
65.2
MONOCYTES_89
64.1
MONOCYTES_90
62.1
MONOCYTES_91
58.0
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Non-classical monocyte TPM: 117.1
Samples: 90
Max TPM: 173.8
Min TPM: 80.3
M2_1
173.8
M2_2
169.1
M2_3
165.4
M2_4
160.4
M2_5
159.7
M2_6
156.0
M2_7
153.7
M2_8
152.1
M2_9
149.2
M2_10
149.0
M2_11
148.7
M2_12
145.2
M2_13
139.8
M2_14
137.9
M2_15
135.7
M2_16
130.0
M2_17
128.8
M2_18
128.5
M2_19
128.3
M2_20
128.2
M2_21
126.2
M2_22
123.1
M2_23
122.6
M2_24
121.2
M2_25
120.6
M2_26
120.5
M2_27
120.2
M2_28
119.7
M2_29
119.6
M2_30
119.6
M2_31
119.0
M2_32
118.8
M2_33
118.5
M2_34
117.9
M2_35
117.3
M2_36
117.1
M2_37
117.0
M2_38
115.8
M2_39
115.7
M2_40
115.5
M2_41
115.4
M2_42
114.7
M2_43
114.6
M2_44
114.5
M2_45
114.2
M2_46
114.1
M2_47
113.7
M2_48
112.7
M2_49
112.6
M2_50
112.6
M2_51
111.4
M2_52
110.5
M2_53
110.2
M2_54
108.6
M2_55
108.3
M2_56
108.1
M2_57
108.0
M2_58
107.9
M2_59
107.8
M2_60
107.1
M2_61
107.0
M2_62
106.5
M2_63
106.5
M2_64
106.4
M2_65
106.2
M2_66
106.1
M2_67
104.9
M2_68
104.7
M2_69
103.3
M2_70
102.5
M2_71
102.4
M2_72
101.6
M2_73
101.5
M2_74
101.1
M2_75
100.8
M2_76
100.8
M2_77
100.6
M2_78
100.6
M2_79
100.3
M2_80
99.8
M2_81
98.7
M2_82
98.7
M2_83
96.9
M2_84
95.0
M2_85
94.1
M2_86
93.4
M2_87
92.4
M2_88
88.7
M2_89
86.2
M2_90
80.3
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