A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
62.6
nTPM
Monaco:
130.6
nTPM
Schmiedel:
104.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
62.6
HPA sample
nTPM
NK-cell nTPM: 62.6
Samples: 6
Max nTPM: 105.2
Min nTPM: 44.2
P10809_1013
48.7
P10809_1033
55.9
P10809_1052
44.2
P10809_1071
73.3
P10809_1093
105.2
P10809_1103
48.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
130.6
Monaco sample
nTPM
NK-cell nTPM: 130.6
Samples: 4
Max nTPM: 147.2
Min nTPM: 113.1
RHH5316_R3683
113.1
RHH5224_R3596
147.2
RHH5253_R3625
125.4
RHH5282_R3654
136.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
104.2
Schmiedel sample id
TPM
NK-cell TPM: 104.2
Samples: 90
Max TPM: 163.2
Min TPM: 65.5
NK_1
163.2
NK_2
163.0
NK_3
153.8
NK_4
143.6
NK_5
141.5
NK_6
141.0
NK_7
139.4
NK_8
138.8
NK_9
136.1
NK_10
134.9
NK_11
128.4
NK_12
128.2
NK_13
125.2
NK_14
121.8
NK_15
120.4
NK_16
118.9
NK_17
118.3
NK_18
118.1
NK_19
118.1
NK_20
116.8
NK_21
115.4
NK_22
114.8
NK_23
113.9
NK_24
113.4
NK_25
113.2
NK_26
112.6
NK_27
112.3
NK_28
110.7
NK_29
110.7
NK_30
110.6
NK_31
110.3
NK_32
109.9
NK_33
108.3
NK_34
106.6
NK_35
106.4
NK_36
104.2
NK_37
103.8
NK_38
103.2
NK_39
103.2
NK_40
102.9
NK_41
102.8
NK_42
102.6
NK_43
102.0
NK_44
101.7
NK_45
101.3
NK_46
101.0
NK_47
100.7
NK_48
100.6
NK_49
99.0
NK_50
98.8
NK_51
98.7
NK_52
98.5
NK_53
96.4
NK_54
95.6
NK_55
95.5
NK_56
95.5
NK_57
95.0
NK_58
94.4
NK_59
93.5
NK_60
93.3
NK_61
91.6
NK_62
91.5
NK_63
91.4
NK_64
90.8
NK_65
90.8
NK_66
90.6
NK_67
90.6
NK_68
90.2
NK_69
89.7
NK_70
89.5
NK_71
89.4
NK_72
88.7
NK_73
88.6
NK_74
88.3
NK_75
87.9
NK_76
87.7
NK_77
87.4
NK_78
87.1
NK_79
84.9
NK_80
84.5
NK_81
83.2
NK_82
83.0
NK_83
82.9
NK_84
82.7
NK_85
80.7
NK_86
76.9
NK_87
76.3
NK_88
74.9
NK_89
69.9
NK_90
65.5
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