On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
35.5
nTPM
HPA Brain:
163.7
nTPM
GTEx:
35.5
nTPM
FANTOM5:
83.4
Scaled Tags Per Million
Macaque:
89.1
nTPM
Mouse:
45.6
nTPM
Rat:
41.0
nTPM
Pig:
119.9
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
163.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 142.6
2219
Male, age 76, both hemispheres
231.5
2586
Male, age 75, left hemisphere
173.5
2828
Female, age 72, unknown
161.1
1827
Male, age 72, unknown
135.8
2666
Male, age 74, left hemisphere
135.3
2019
Male, age 18, unknown
130.6
1870
Female, age 42, unknown
119.2
1830
Male, age 51, unknown
114.8
2411
Female, age 72, unknown
113.5
1833
Male, age 53, unknown
110.5
Dorsal raphe nucleus nTPM: 135.5
2016
Female, age 72, unknown
150.6
2047
Male, age 72, unknown
149.4
1828
Male, age 53, unknown
146.9
2298
Female, age 72, unknown
131.7
2750
Male, age 76, both hemispheres
98.6
Inferior colliculus nTPM: 133.1
1890
Male, age 53, unknown
142.0
1848
Female, age 42, unknown
140.7
2849
Male, age 72, unknown
128.4
2097
Female, age 72, unknown
121.4
Median raphe nucleus nTPM: 132.0
2220
Male, age 76, midline
132.0
Periaquaductal grey, anterior nTPM: 163.7
1947
Male, age 18, unknown
200.3
1795
Male, age 51, unknown
170.1
2502
Female, age 75, unknown
120.6
Periaquaductal grey, dorsal nTPM: 142.8
2850
Male, age 76, both hemispheres
189.1
1840
Male, age 53, unknown
140.1
2464
Female, age 72, unknown
123.2
1831
Male, age 72, unknown
119.0
Periaquaductal grey, lateral nTPM: 148.7
2140
Male, age 76, both hemispheres
183.0
2053
Male, age 18, unknown
139.4
2272
Male, age 74, both hemispheres
123.6
Pretectal area nTPM: 132.6
1817
Female, age 42, unknown
155.8
2667
Female, age 75, unknown
147.3
1816
Male, age 51, unknown
139.4
1944
Female, age 72, unknown
136.2
2273
Male, age 74, both hemispheres
135.0
2007
Male, age 72, unknown
131.7
2407
Male, age 75, both hemispheres
131.5
2825
Male, age 18, unknown
130.1
2224
Female, age 72, unknown
125.9
2316
Male, age 76, right hemisphere
114.2
1815
Male, age 53, unknown
111.9
Red nucleus nTPM: 114.6
2725
Female, age 75, unknown
130.9
1821
Female, age 72, unknown
125.1
1954
Female, age 42, unknown
123.7
2503
Female, age 72, unknown
123.3
2584
Male, age 75, left hemisphere
119.0
1865
Male, age 51, unknown
114.2
2227
Male, age 72, unknown
113.7
2769
Male, age 72, unknown
111.0
2588
Male, age 74, left hemisphere
108.4
2785
Male, age 18, unknown
105.7
1904
Male, age 53, unknown
105.2
2823
Male, age 76, right hemisphere
94.6
Substantia nigra nTPM: 143.9
1941
Male, age 53, unknown
174.0
1916
Female, age 42, unknown
156.9
1851
Male, age 51, unknown
151.2
2241
Male, age 72, unknown
148.7
2665
Male, age 74, both hemispheres
138.4
2583
Male, age 75, right hemisphere
138.3
2590
Female, age 75, unknown
138.2
2699
Male, age 18, unknown
136.3
2409
Female, age 72, unknown
128.6
1889
Female, age 72, unknown
128.5
Superior colliculus nTPM: 128.6
1796
Male, age 53, unknown
142.4
1995
Male, age 72, unknown
142.3
2664
Male, age 75, both hemispheres
141.4
2668
Female, age 75, unknown
137.5
2087
Female, age 72, unknown
133.4
2261
Male, age 18, unknown
131.5
1839
Male, age 51, unknown
129.2
1913
Female, age 42, unknown
118.3
2587
Male, age 74, left hemisphere
115.8
1895
Male, age 76, right hemisphere
93.8
Ventral tegmental area nTPM: 137.2
1915
Female, age 42, unknown
140.8
2021
Male, age 53, unknown
139.2
1942
Male, age 51, unknown
138.6
2218
Male, age 76, both hemispheres
137.0
2223
Female, age 72, unknown
135.6
2410
Female, age 72, unknown
132.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
35.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 35.5
Samples: 183
Max nTPM: 63.1
Min nTPM: 10.1
Std nTPM: 9.8
Median nTPM: 35.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
63.1
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
58.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
58.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
58.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
56.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
56.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
55.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
55.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
55.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
54.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
54.2
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
53.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
53.4
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
53.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
52.7
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
51.8
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
49.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
49.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
48.8
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
48.2
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
47.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
47.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
47.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
47.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
47.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
46.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
46.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
45.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
45.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
45.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
44.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
44.1
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
43.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
43.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
42.8
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
42.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
42.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
42.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
42.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
42.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
42.0
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
41.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
41.4
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
41.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
41.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
41.2
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
40.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
40.1
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
40.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
40.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
39.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
39.6
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
39.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
39.3
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
39.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
39.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
39.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
38.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
38.6
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
38.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
38.3
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
38.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
38.0
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
37.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
37.9
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
37.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
37.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
37.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
37.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
37.4
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
37.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
37.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
37.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
37.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
37.0
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
36.8
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
36.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
36.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
36.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
36.4
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
36.4
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
36.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
36.2
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
36.1
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
36.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
35.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
35.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
35.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
35.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
35.2
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
35.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
35.0
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
34.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
34.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
34.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
34.6
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
34.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
34.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
34.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
34.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
34.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
34.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
33.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
33.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
33.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
33.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
33.3
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
33.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
33.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
33.1
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
32.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
32.7
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
32.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
32.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
32.4
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
32.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
31.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
31.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
31.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
31.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
31.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
31.5
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
31.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
31.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
31.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
31.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
31.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
30.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
30.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
30.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
30.4
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
30.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
29.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
29.6
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
29.6
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
29.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
29.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
29.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
28.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
28.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
28.7
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
28.5
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
28.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
28.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
28.1
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
27.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
27.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
27.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
27.4
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
27.3
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
26.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
26.9
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
26.8
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
26.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
26.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
26.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
26.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
25.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
25.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
25.2
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
24.5
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
24.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
23.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
23.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
23.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
23.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
22.9
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
22.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
21.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
21.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
21.5
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
21.4
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
20.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
19.6
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
19.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
18.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
18.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
18.3
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
16.6
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
16.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
13.5
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
13.2
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
10.1
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
89.1
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 84.4
Samples: 1
Max nTPM: 84.4
Min nTPM: 84.4
Sample A
84.4
Midbrain nTPM: 89.1
Samples: 1
Max nTPM: 89.1
Min nTPM: 89.1
Sample A
89.1
Superior colliculi nTPM: 82.2
Samples: 1
Max nTPM: 82.2
Min nTPM: 82.2
Sample A
82.2
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
119.9
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 118.7
Samples: 3
Max nTPM: 120.2
Min nTPM: 116.0
Sample A
Female
116.0
Sample B
Female
120.0
Sample C
Male
120.2
Midbrain nTPM: 114.6
Samples: 3
Max nTPM: 119.2
Min nTPM: 110.2
Sample B
Female
114.4
Sample C
Male
110.2
Sample D
Male
119.2
Periaqueductal gray nTPM: 118.0
Samples: 3
Max nTPM: 122.2
Min nTPM: 114.0
Sample B
Female
117.8
Sample C
Male
122.2
Sample D
Male
114.0
Superior colliculi nTPM: 119.9
Samples: 4
Max nTPM: 133.2
Min nTPM: 100.0
Sample A
Female
127.4
Sample B
Female
133.2
Sample C
Male
100.0
Sample D
Male
119.0
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
45.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 45.6
Samples: 4
Max nTPM: 47.4
Min nTPM: 42.5
Sample A
42.5
Sample B
46.8
Sample C
47.4
Sample D
45.5
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
41.0
Rat sample
Sample description
nTPM
Midbrain nTPM: 41.1
Samples: 4
Max nTPM: 42.0
Min nTPM: 39.9
Sample A
39.9
Sample A
42.0
Sample A
41.6
Sample A
40.7
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
