A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.7
nTPM
Monaco:
52.2
nTPM
Schmiedel:
31.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.7
HPA sample
nTPM
Memory B-cell nTPM: 6.6
Samples: 6
Max nTPM: 13.0
Min nTPM: 3.1
P10809_1017
10.8
P10809_1025
4.2
P10809_1044
3.1
P10809_1063
3.9
P10809_1092
13.0
P10809_1105
4.9
Naive B-cell nTPM: 6.4
Samples: 6
Max nTPM: 12.7
Min nTPM: 2.9
P10809_1011
9.4
P10809_1029
3.5
P10809_1048
2.9
P10809_1067
5.0
P10809_1091
12.7
P10809_1104
4.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
52.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 43.2
Samples: 4
Max nTPM: 60.1
Min nTPM: 27.1
RHH5310_R3677
27.1
RHH5218_R3590
39.0
RHH5247_R3619
46.5
RHH5276_R3648
60.1
Naive B-cell nTPM: 52.2
Samples: 4
Max nTPM: 83.2
Min nTPM: 32.4
RHH5308_R3675
43.5
RHH5216_R3588
32.4
RHH5245_R3617
83.2
RHH5274_R3646
49.7
Non-switched memory B-cell nTPM: 46.3
Samples: 4
Max nTPM: 60.8
Min nTPM: 30.1
RHH5309_R3676
30.1
RHH5217_R3589
60.8
RHH5246_R3618
41.8
RHH5275_R3647
52.5
Plasmablast nTPM: 24.8
Samples: 4
Max nTPM: 26.8
Min nTPM: 22.7
RHH5312_R3679
25.0
RHH5220_R3592
26.8
RHH5249_R3621
22.7
RHH5278_R3650
24.7
Switched memory B-cell nTPM: 45.8
Samples: 4
Max nTPM: 53.6
Min nTPM: 26.4
RHH5311_R3678
26.4
RHH5219_R3591
51.0
RHH5248_R3620
53.6
RHH5277_R3649
52.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.5
Schmiedel sample id
TPM
Naive B-cell TPM: 31.5
Samples: 91
Max TPM: 53.2
Min TPM: 8.7
B_CELL_NAIVE_1
53.2
B_CELL_NAIVE_2
48.4
B_CELL_NAIVE_3
47.7
B_CELL_NAIVE_4
47.0
B_CELL_NAIVE_5
45.2
B_CELL_NAIVE_6
44.6
B_CELL_NAIVE_7
44.5
B_CELL_NAIVE_8
44.5
B_CELL_NAIVE_9
44.2
B_CELL_NAIVE_10
42.5
B_CELL_NAIVE_11
42.5
B_CELL_NAIVE_12
42.1
B_CELL_NAIVE_13
41.5
B_CELL_NAIVE_14
41.0
B_CELL_NAIVE_15
40.5
B_CELL_NAIVE_16
39.5
B_CELL_NAIVE_17
39.3
B_CELL_NAIVE_18
38.9
B_CELL_NAIVE_19
38.9
B_CELL_NAIVE_20
38.9
B_CELL_NAIVE_21
38.6
B_CELL_NAIVE_22
38.6
B_CELL_NAIVE_23
38.3
B_CELL_NAIVE_24
38.1
B_CELL_NAIVE_25
37.9
B_CELL_NAIVE_26
37.6
B_CELL_NAIVE_27
37.4
B_CELL_NAIVE_28
36.3
B_CELL_NAIVE_29
36.3
B_CELL_NAIVE_30
35.9
B_CELL_NAIVE_31
35.8
B_CELL_NAIVE_32
35.4
B_CELL_NAIVE_33
35.2
B_CELL_NAIVE_34
35.0
B_CELL_NAIVE_35
34.9
B_CELL_NAIVE_36
34.8
B_CELL_NAIVE_37
34.7
B_CELL_NAIVE_38
34.6
B_CELL_NAIVE_39
34.3
B_CELL_NAIVE_40
34.0
B_CELL_NAIVE_41
33.8
B_CELL_NAIVE_42
33.8
B_CELL_NAIVE_43
33.6
B_CELL_NAIVE_44
33.5
B_CELL_NAIVE_45
32.9
B_CELL_NAIVE_46
32.8
B_CELL_NAIVE_47
32.7
B_CELL_NAIVE_48
32.6
B_CELL_NAIVE_49
32.5
B_CELL_NAIVE_50
31.9
B_CELL_NAIVE_51
31.5
B_CELL_NAIVE_52
31.4
B_CELL_NAIVE_53
30.8
B_CELL_NAIVE_54
29.4
B_CELL_NAIVE_55
29.4
B_CELL_NAIVE_56
29.2
B_CELL_NAIVE_57
29.1
B_CELL_NAIVE_58
29.1
B_CELL_NAIVE_59
28.9
B_CELL_NAIVE_60
28.7
B_CELL_NAIVE_61
28.6
B_CELL_NAIVE_62
28.5
B_CELL_NAIVE_63
28.2
B_CELL_NAIVE_64
27.9
B_CELL_NAIVE_65
27.7
B_CELL_NAIVE_66
27.0
B_CELL_NAIVE_67
26.3
B_CELL_NAIVE_68
26.1
B_CELL_NAIVE_69
25.6
B_CELL_NAIVE_70
25.3
B_CELL_NAIVE_71
24.7
B_CELL_NAIVE_72
23.7
B_CELL_NAIVE_73
23.6
B_CELL_NAIVE_74
23.4
B_CELL_NAIVE_75
22.2
B_CELL_NAIVE_76
21.7
B_CELL_NAIVE_77
20.2
B_CELL_NAIVE_78
18.7
B_CELL_NAIVE_79
18.7
B_CELL_NAIVE_80
18.5
B_CELL_NAIVE_81
18.2
B_CELL_NAIVE_82
18.0
B_CELL_NAIVE_83
17.2
B_CELL_NAIVE_84
17.1
B_CELL_NAIVE_85
16.9
B_CELL_NAIVE_86
15.5
B_CELL_NAIVE_87
14.5
B_CELL_NAIVE_88
14.4
B_CELL_NAIVE_89
12.2
B_CELL_NAIVE_90
10.2
B_CELL_NAIVE_91
8.7
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