A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.7
nTPM
Monaco:
89.6
nTPM
Schmiedel:
73.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.7
HPA sample
nTPM
Classical monocyte nTPM: 6.4
Samples: 6
Max nTPM: 18.4
Min nTPM: 2.0
P10809_1003
5.4
P10809_1020
2.0
P10809_1039
3.8
P10809_1058
3.4
P10809_1080
18.4
P10809_1107
5.1
Intermediate monocyte nTPM: 8.2
Samples: 6
Max nTPM: 17.9
Min nTPM: 2.8
P10809_1004
11.6
P10809_1023
2.8
P10809_1042
7.1
P10809_1061
6.0
P10809_1081
17.9
P10809_1108
3.5
Non-classical monocyte nTPM: 15.7
Samples: 5
Max nTPM: 28.5
Min nTPM: 7.7
P10809_1005
17.9
P10809_1053
9.9
P10809_1072
14.7
P10809_1082
28.5
P10809_1109
7.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
89.6
Monaco sample
nTPM
Classical monocyte nTPM: 37.8
Samples: 4
Max nTPM: 41.6
Min nTPM: 33.6
RHH5313_R3680
33.6
RHH5221_R3593
39.9
RHH5250_R3622
36.2
RHH5279_R3651
41.6
Intermediate monocyte nTPM: 77.8
Samples: 4
Max nTPM: 116.3
Min nTPM: 59.1
RHH5314_R3681
59.1
RHH5222_R3594
65.8
RHH5251_R3623
116.3
RHH5280_R3652
69.8
Non-classical monocyte nTPM: 89.6
Samples: 4
Max nTPM: 131.9
Min nTPM: 68.0
RHH5315_R3682
84.5
RHH5223_R3595
68.0
RHH5252_R3624
131.9
RHH5281_R3653
74.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
73.4
Schmiedel sample id
TPM
Classical monocyte TPM: 32.7
Samples: 91
Max TPM: 48.0
Min TPM: 16.4
MONOCYTES_1
48.0
MONOCYTES_2
46.2
MONOCYTES_3
44.7
MONOCYTES_4
44.4
MONOCYTES_5
44.3
MONOCYTES_6
43.9
MONOCYTES_7
43.7
MONOCYTES_8
43.2
MONOCYTES_9
42.5
MONOCYTES_10
42.4
MONOCYTES_11
42.1
MONOCYTES_12
42.1
MONOCYTES_13
42.1
MONOCYTES_14
42.0
MONOCYTES_15
40.7
MONOCYTES_16
40.4
MONOCYTES_17
40.3
MONOCYTES_18
39.7
MONOCYTES_19
39.6
MONOCYTES_20
39.5
MONOCYTES_21
39.5
MONOCYTES_22
39.5
MONOCYTES_23
39.3
MONOCYTES_24
38.1
MONOCYTES_25
38.0
MONOCYTES_26
37.2
MONOCYTES_27
37.2
MONOCYTES_28
36.9
MONOCYTES_29
36.8
MONOCYTES_30
36.7
MONOCYTES_31
35.6
MONOCYTES_32
35.5
MONOCYTES_33
35.0
MONOCYTES_34
34.6
MONOCYTES_35
34.5
MONOCYTES_36
34.1
MONOCYTES_37
34.0
MONOCYTES_38
34.0
MONOCYTES_39
33.7
MONOCYTES_40
33.7
MONOCYTES_41
33.7
MONOCYTES_42
33.4
MONOCYTES_43
33.2
MONOCYTES_44
32.8
MONOCYTES_45
32.1
MONOCYTES_46
32.1
MONOCYTES_47
32.0
MONOCYTES_48
31.5
MONOCYTES_49
31.3
MONOCYTES_50
31.2
MONOCYTES_51
31.2
MONOCYTES_52
31.0
MONOCYTES_53
31.0
MONOCYTES_54
30.8
MONOCYTES_55
30.7
MONOCYTES_56
30.6
MONOCYTES_57
30.6
MONOCYTES_58
30.1
MONOCYTES_59
30.0
MONOCYTES_60
29.9
MONOCYTES_61
29.8
MONOCYTES_62
29.3
MONOCYTES_63
29.2
MONOCYTES_64
29.2
MONOCYTES_65
28.8
MONOCYTES_66
28.7
MONOCYTES_67
28.5
MONOCYTES_68
28.2
MONOCYTES_69
27.9
MONOCYTES_70
27.4
MONOCYTES_71
27.1
MONOCYTES_72
27.0
MONOCYTES_73
26.9
MONOCYTES_74
26.4
MONOCYTES_75
26.4
MONOCYTES_76
26.0
MONOCYTES_77
24.9
MONOCYTES_78
24.9
MONOCYTES_79
24.8
MONOCYTES_80
24.7
MONOCYTES_81
23.7
MONOCYTES_82
23.5
MONOCYTES_83
22.8
MONOCYTES_84
22.2
MONOCYTES_85
22.0
MONOCYTES_86
20.5
MONOCYTES_87
19.9
MONOCYTES_88
19.6
MONOCYTES_89
17.7
MONOCYTES_90
17.0
MONOCYTES_91
16.4
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Non-classical monocyte TPM: 73.4
Samples: 90
Max TPM: 139.9
Min TPM: 29.7
M2_1
139.9
M2_2
113.4
M2_3
109.2
M2_4
106.2
M2_5
105.4
M2_6
105.0
M2_7
104.0
M2_8
103.8
M2_9
102.1
M2_10
101.6
M2_11
100.7
M2_12
100.1
M2_13
97.8
M2_14
97.3
M2_15
94.1
M2_16
94.0
M2_17
93.8
M2_18
93.1
M2_19
92.3
M2_20
92.0
M2_21
91.6
M2_22
91.2
M2_23
90.8
M2_24
90.0
M2_25
88.1
M2_26
86.7
M2_27
84.5
M2_28
83.2
M2_29
82.7
M2_30
82.7
M2_31
82.6
M2_32
82.4
M2_33
82.3
M2_34
81.7
M2_35
81.4
M2_36
80.8
M2_37
80.3
M2_38
80.0
M2_39
79.9
M2_40
78.6
M2_41
77.2
M2_42
77.0
M2_43
75.5
M2_44
73.3
M2_45
72.6
M2_46
72.4
M2_47
71.6
M2_48
71.1
M2_49
70.7
M2_50
69.5
M2_51
69.0
M2_52
67.9
M2_53
67.5
M2_54
65.3
M2_55
64.8
M2_56
64.6
M2_57
64.5
M2_58
64.5
M2_59
64.2
M2_60
64.0
M2_61
63.4
M2_62
62.7
M2_63
62.3
M2_64
61.2
M2_65
60.7
M2_66
56.8
M2_67
56.1
M2_68
55.2
M2_69
55.1
M2_70
55.1
M2_71
54.2
M2_72
54.0
M2_73
54.0
M2_74
53.4
M2_75
50.8
M2_76
50.3
M2_77
46.8
M2_78
46.7
M2_79
46.0
M2_80
45.2
M2_81
45.1
M2_82
45.1
M2_83
44.9
M2_84
44.0
M2_85
42.6
M2_86
40.8
M2_87
36.9
M2_88
35.4
M2_89
33.1
M2_90
29.7
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