A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.2
nTPM
Monaco:
78.7
nTPM
Schmiedel:
91.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.2
HPA sample
nTPM
NK-cell nTPM: 8.2
Samples: 6
Max nTPM: 30.1
Min nTPM: 1.0
P10809_1013
6.8
P10809_1033
1.0
P10809_1052
5.9
P10809_1071
1.4
P10809_1093
30.1
P10809_1103
4.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
78.7
Monaco sample
nTPM
NK-cell nTPM: 78.7
Samples: 4
Max nTPM: 99.0
Min nTPM: 60.5
RHH5316_R3683
78.1
RHH5224_R3596
60.5
RHH5253_R3625
99.0
RHH5282_R3654
77.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
91.1
Schmiedel sample id
TPM
NK-cell TPM: 91.0
Samples: 90
Max TPM: 181.1
Min TPM: 36.1
NK_1
181.1
NK_2
160.0
NK_3
156.4
NK_4
146.9
NK_5
145.6
NK_6
144.6
NK_7
142.5
NK_8
141.7
NK_9
140.8
NK_10
140.5
NK_11
139.4
NK_12
137.4
NK_13
134.6
NK_14
133.3
NK_15
130.2
NK_16
118.1
NK_17
114.8
NK_18
114.8
NK_19
113.7
NK_20
112.4
NK_21
110.9
NK_22
110.4
NK_23
109.2
NK_24
108.7
NK_25
108.2
NK_26
108.1
NK_27
108.0
NK_28
107.2
NK_29
106.9
NK_30
106.2
NK_31
105.1
NK_32
103.2
NK_33
99.0
NK_34
97.2
NK_35
96.4
NK_36
96.3
NK_37
96.1
NK_38
94.2
NK_39
93.3
NK_40
90.9
NK_41
90.6
NK_42
88.7
NK_43
87.9
NK_44
87.7
NK_45
87.7
NK_46
87.6
NK_47
87.4
NK_48
85.6
NK_49
85.0
NK_50
84.9
NK_51
83.1
NK_52
83.1
NK_53
82.6
NK_54
81.6
NK_55
81.0
NK_56
79.7
NK_57
77.4
NK_58
77.0
NK_59
76.4
NK_60
75.7
NK_61
74.2
NK_62
73.9
NK_63
73.5
NK_64
71.6
NK_65
71.3
NK_66
65.4
NK_67
64.8
NK_68
64.7
NK_69
64.6
NK_70
64.4
NK_71
64.1
NK_72
61.9
NK_73
61.0
NK_74
58.2
NK_75
57.7
NK_76
56.7
NK_77
56.1
NK_78
55.9
NK_79
55.0
NK_80
54.9
NK_81
51.6
NK_82
51.3
NK_83
48.9
NK_84
48.4
NK_85
47.7
NK_86
46.2
NK_87
41.2
NK_88
40.0
NK_89
38.1
NK_90
36.1
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