A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.8
nTPM
Monaco:
33.6
nTPM
Schmiedel:
87.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.8
HPA sample
nTPM
Memory B-cell nTPM: 2.8
Samples: 6
Max nTPM: 5.3
Min nTPM: 1.4
P10809_1017
1.4
P10809_1025
2.1
P10809_1044
2.6
P10809_1063
5.3
P10809_1092
3.4
P10809_1105
2.0
Naive B-cell nTPM: 2.4
Samples: 6
Max nTPM: 3.6
Min nTPM: 0.9
P10809_1011
3.6
P10809_1029
2.8
P10809_1048
1.9
P10809_1067
2.7
P10809_1091
0.9
P10809_1104
2.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 28.0
Samples: 4
Max nTPM: 39.0
Min nTPM: 18.3
RHH5310_R3677
27.4
RHH5218_R3590
27.1
RHH5247_R3619
18.3
RHH5276_R3648
39.0
Naive B-cell nTPM: 27.6
Samples: 4
Max nTPM: 41.6
Min nTPM: 17.5
RHH5308_R3675
22.5
RHH5216_R3588
17.5
RHH5245_R3617
41.6
RHH5274_R3646
28.9
Non-switched memory B-cell nTPM: 33.6
Samples: 4
Max nTPM: 57.0
Min nTPM: 21.9
RHH5309_R3676
21.9
RHH5217_R3589
24.6
RHH5246_R3618
57.0
RHH5275_R3647
30.9
Plasmablast nTPM: 20.6
Samples: 4
Max nTPM: 29.4
Min nTPM: 15.6
RHH5312_R3679
15.6
RHH5220_R3592
21.4
RHH5249_R3621
29.4
RHH5278_R3650
16.1
Switched memory B-cell nTPM: 28.4
Samples: 4
Max nTPM: 50.2
Min nTPM: 18.6
RHH5311_R3678
18.6
RHH5219_R3591
50.2
RHH5248_R3620
24.5
RHH5277_R3649
20.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
87.7
Schmiedel sample id
TPM
Naive B-cell TPM: 87.7
Samples: 91
Max TPM: 128.9
Min TPM: 27.1
B_CELL_NAIVE_1
128.9
B_CELL_NAIVE_2
128.8
B_CELL_NAIVE_3
120.0
B_CELL_NAIVE_4
119.0
B_CELL_NAIVE_5
118.1
B_CELL_NAIVE_6
118.0
B_CELL_NAIVE_7
116.3
B_CELL_NAIVE_8
115.5
B_CELL_NAIVE_9
115.2
B_CELL_NAIVE_10
115.2
B_CELL_NAIVE_11
114.7
B_CELL_NAIVE_12
114.6
B_CELL_NAIVE_13
113.6
B_CELL_NAIVE_14
113.3
B_CELL_NAIVE_15
113.3
B_CELL_NAIVE_16
112.1
B_CELL_NAIVE_17
112.0
B_CELL_NAIVE_18
111.8
B_CELL_NAIVE_19
111.1
B_CELL_NAIVE_20
108.8
B_CELL_NAIVE_21
108.7
B_CELL_NAIVE_22
108.4
B_CELL_NAIVE_23
108.0
B_CELL_NAIVE_24
106.8
B_CELL_NAIVE_25
104.4
B_CELL_NAIVE_26
103.6
B_CELL_NAIVE_27
101.9
B_CELL_NAIVE_28
101.3
B_CELL_NAIVE_29
100.6
B_CELL_NAIVE_30
100.4
B_CELL_NAIVE_31
100.2
B_CELL_NAIVE_32
98.5
B_CELL_NAIVE_33
97.8
B_CELL_NAIVE_34
96.7
B_CELL_NAIVE_35
96.7
B_CELL_NAIVE_36
96.2
B_CELL_NAIVE_37
94.9
B_CELL_NAIVE_38
94.5
B_CELL_NAIVE_39
94.2
B_CELL_NAIVE_40
93.9
B_CELL_NAIVE_41
91.7
B_CELL_NAIVE_42
91.7
B_CELL_NAIVE_43
91.7
B_CELL_NAIVE_44
91.3
B_CELL_NAIVE_45
89.8
B_CELL_NAIVE_46
89.4
B_CELL_NAIVE_47
89.2
B_CELL_NAIVE_48
88.9
B_CELL_NAIVE_49
88.9
B_CELL_NAIVE_50
88.6
B_CELL_NAIVE_51
88.5
B_CELL_NAIVE_52
88.4
B_CELL_NAIVE_53
87.8
B_CELL_NAIVE_54
87.2
B_CELL_NAIVE_55
87.0
B_CELL_NAIVE_56
86.7
B_CELL_NAIVE_57
84.9
B_CELL_NAIVE_58
83.6
B_CELL_NAIVE_59
83.4
B_CELL_NAIVE_60
82.3
B_CELL_NAIVE_61
82.0
B_CELL_NAIVE_62
78.5
B_CELL_NAIVE_63
77.9
B_CELL_NAIVE_64
77.6
B_CELL_NAIVE_65
77.5
B_CELL_NAIVE_66
76.9
B_CELL_NAIVE_67
75.4
B_CELL_NAIVE_68
75.2
B_CELL_NAIVE_69
74.9
B_CELL_NAIVE_70
73.5
B_CELL_NAIVE_71
72.2
B_CELL_NAIVE_72
71.2
B_CELL_NAIVE_73
70.9
B_CELL_NAIVE_74
70.8
B_CELL_NAIVE_75
68.5
B_CELL_NAIVE_76
65.8
B_CELL_NAIVE_77
64.9
B_CELL_NAIVE_78
63.4
B_CELL_NAIVE_79
63.0
B_CELL_NAIVE_80
57.6
B_CELL_NAIVE_81
52.5
B_CELL_NAIVE_82
50.8
B_CELL_NAIVE_83
47.7
B_CELL_NAIVE_84
47.2
B_CELL_NAIVE_85
43.1
B_CELL_NAIVE_86
43.0
B_CELL_NAIVE_87
40.0
B_CELL_NAIVE_88
37.4
B_CELL_NAIVE_89
32.0
B_CELL_NAIVE_90
28.9
B_CELL_NAIVE_91
27.1
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