A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.6
nTPM
Monaco:
31.8
nTPM
Schmiedel:
141.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.6
HPA sample
nTPM
NK-cell nTPM: 2.6
Samples: 6
Max nTPM: 4.7
Min nTPM: 1.0
P10809_1013
1.0
P10809_1033
3.5
P10809_1052
3.1
P10809_1071
1.7
P10809_1093
4.7
P10809_1103
1.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.8
Monaco sample
nTPM
NK-cell nTPM: 31.8
Samples: 4
Max nTPM: 41.3
Min nTPM: 25.6
RHH5316_R3683
41.3
RHH5224_R3596
25.6
RHH5253_R3625
31.1
RHH5282_R3654
29.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
141.6
Schmiedel sample id
TPM
NK-cell TPM: 141.6
Samples: 90
Max TPM: 236.0
Min TPM: 53.6
NK_1
236.0
NK_2
230.9
NK_3
228.5
NK_4
217.1
NK_5
215.4
NK_6
206.2
NK_7
206.0
NK_8
203.6
NK_9
202.8
NK_10
201.9
NK_11
197.7
NK_12
197.1
NK_13
196.8
NK_14
194.8
NK_15
193.9
NK_16
193.7
NK_17
185.9
NK_18
182.1
NK_19
178.9
NK_20
177.1
NK_21
173.3
NK_22
172.6
NK_23
168.4
NK_24
167.5
NK_25
166.2
NK_26
164.1
NK_27
163.4
NK_28
159.9
NK_29
159.9
NK_30
158.3
NK_31
157.2
NK_32
157.0
NK_33
155.6
NK_34
155.5
NK_35
154.7
NK_36
152.4
NK_37
150.5
NK_38
150.3
NK_39
150.0
NK_40
149.5
NK_41
149.5
NK_42
149.3
NK_43
147.4
NK_44
146.7
NK_45
146.6
NK_46
142.6
NK_47
138.1
NK_48
137.9
NK_49
132.3
NK_50
131.9
NK_51
130.4
NK_52
126.8
NK_53
126.8
NK_54
126.3
NK_55
126.1
NK_56
124.8
NK_57
124.4
NK_58
123.6
NK_59
123.0
NK_60
122.8
NK_61
121.4
NK_62
120.2
NK_63
117.6
NK_64
115.6
NK_65
115.5
NK_66
111.7
NK_67
111.6
NK_68
111.4
NK_69
111.2
NK_70
106.4
NK_71
104.2
NK_72
103.9
NK_73
101.8
NK_74
98.8
NK_75
98.3
NK_76
93.2
NK_77
90.3
NK_78
89.8
NK_79
89.8
NK_80
86.0
NK_81
84.7
NK_82
83.3
NK_83
81.7
NK_84
80.2
NK_85
79.5
NK_86
72.8
NK_87
69.7
NK_88
65.1
NK_89
63.0
NK_90
53.6
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