A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.0
nTPM
Monaco:
57.3
nTPM
Schmiedel:
144.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.0
HPA sample
nTPM
Classical monocyte nTPM: 3.2
Samples: 6
Max nTPM: 4.4
Min nTPM: 1.9
P10809_1003
2.2
P10809_1020
2.7
P10809_1039
4.0
P10809_1058
3.8
P10809_1080
1.9
P10809_1107
4.4
Intermediate monocyte nTPM: 4.0
Samples: 6
Max nTPM: 7.9
Min nTPM: 1.2
P10809_1004
3.3
P10809_1023
4.1
P10809_1042
1.2
P10809_1061
7.9
P10809_1081
3.2
P10809_1108
4.1
Non-classical monocyte nTPM: 2.7
Samples: 5
Max nTPM: 3.6
Min nTPM: 1.6
P10809_1005
1.6
P10809_1053
1.9
P10809_1072
3.6
P10809_1082
3.1
P10809_1109
3.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.3
Monaco sample
nTPM
Classical monocyte nTPM: 37.8
Samples: 4
Max nTPM: 42.3
Min nTPM: 32.3
RHH5313_R3680
32.3
RHH5221_R3593
42.3
RHH5250_R3622
35.8
RHH5279_R3651
41.0
Intermediate monocyte nTPM: 57.3
Samples: 4
Max nTPM: 97.0
Min nTPM: 31.9
RHH5314_R3681
31.9
RHH5222_R3594
52.9
RHH5251_R3623
97.0
RHH5280_R3652
47.4
Non-classical monocyte nTPM: 37.4
Samples: 4
Max nTPM: 42.6
Min nTPM: 29.8
RHH5315_R3682
42.6
RHH5223_R3595
29.8
RHH5252_R3624
40.2
RHH5281_R3653
36.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
144.2
Schmiedel sample id
TPM
Classical monocyte TPM: 139.3
Samples: 91
Max TPM: 187.9
Min TPM: 78.6
MONOCYTES_1
187.9
MONOCYTES_2
186.6
MONOCYTES_3
185.7
MONOCYTES_4
184.7
MONOCYTES_5
183.8
MONOCYTES_6
180.7
MONOCYTES_7
179.5
MONOCYTES_8
178.2
MONOCYTES_9
177.9
MONOCYTES_10
177.2
MONOCYTES_11
177.1
MONOCYTES_12
175.6
MONOCYTES_13
174.4
MONOCYTES_14
173.5
MONOCYTES_15
172.4
MONOCYTES_16
168.4
MONOCYTES_17
168.1
MONOCYTES_18
167.3
MONOCYTES_19
166.5
MONOCYTES_20
165.6
MONOCYTES_21
165.3
MONOCYTES_22
164.5
MONOCYTES_23
162.7
MONOCYTES_24
160.8
MONOCYTES_25
160.1
MONOCYTES_26
159.8
MONOCYTES_27
159.8
MONOCYTES_28
159.2
MONOCYTES_29
157.6
MONOCYTES_30
156.6
MONOCYTES_31
154.4
MONOCYTES_32
153.7
MONOCYTES_33
152.4
MONOCYTES_34
152.3
MONOCYTES_35
152.2
MONOCYTES_36
151.4
MONOCYTES_37
151.0
MONOCYTES_38
150.1
MONOCYTES_39
148.8
MONOCYTES_40
140.9
MONOCYTES_41
140.4
MONOCYTES_42
140.3
MONOCYTES_43
140.2
MONOCYTES_44
140.0
MONOCYTES_45
139.7
MONOCYTES_46
138.6
MONOCYTES_47
138.4
MONOCYTES_48
138.1
MONOCYTES_49
136.4
MONOCYTES_50
136.1
MONOCYTES_51
135.8
MONOCYTES_52
134.9
MONOCYTES_53
133.1
MONOCYTES_54
133.0
MONOCYTES_55
131.3
MONOCYTES_56
131.1
MONOCYTES_57
127.6
MONOCYTES_58
127.0
MONOCYTES_59
126.6
MONOCYTES_60
126.5
MONOCYTES_61
123.3
MONOCYTES_62
123.2
MONOCYTES_63
123.0
MONOCYTES_64
122.8
MONOCYTES_65
122.3
MONOCYTES_66
120.9
MONOCYTES_67
120.0
MONOCYTES_68
120.0
MONOCYTES_69
119.7
MONOCYTES_70
119.6
MONOCYTES_71
118.9
MONOCYTES_72
116.2
MONOCYTES_73
114.7
MONOCYTES_74
113.9
MONOCYTES_75
113.2
MONOCYTES_76
112.6
MONOCYTES_77
112.6
MONOCYTES_78
109.8
MONOCYTES_79
109.5
MONOCYTES_80
107.8
MONOCYTES_81
106.2
MONOCYTES_82
98.6
MONOCYTES_83
97.4
MONOCYTES_84
94.4
MONOCYTES_85
88.7
MONOCYTES_86
87.4
MONOCYTES_87
86.3
MONOCYTES_88
86.3
MONOCYTES_89
86.1
MONOCYTES_90
82.3
MONOCYTES_91
78.6
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Non-classical monocyte TPM: 144.2
Samples: 90
Max TPM: 210.2
Min TPM: 62.4
M2_1
210.2
M2_2
208.9
M2_3
208.6
M2_4
203.7
M2_5
203.2
M2_6
202.5
M2_7
200.6
M2_8
192.4
M2_9
190.5
M2_10
187.3
M2_11
186.9
M2_12
186.6
M2_13
183.8
M2_14
183.8
M2_15
180.7
M2_16
180.5
M2_17
178.8
M2_18
177.6
M2_19
176.6
M2_20
173.5
M2_21
173.4
M2_22
173.4
M2_23
172.9
M2_24
172.2
M2_25
171.2
M2_26
171.2
M2_27
169.2
M2_28
168.1
M2_29
166.4
M2_30
166.1
M2_31
165.1
M2_32
164.9
M2_33
164.2
M2_34
162.5
M2_35
161.3
M2_36
160.8
M2_37
160.6
M2_38
159.0
M2_39
159.0
M2_40
158.6
M2_41
157.8
M2_42
156.9
M2_43
156.3
M2_44
156.1
M2_45
154.8
M2_46
152.9
M2_47
151.7
M2_48
149.2
M2_49
148.1
M2_50
146.5
M2_51
146.0
M2_52
145.5
M2_53
144.5
M2_54
140.2
M2_55
139.6
M2_56
136.3
M2_57
130.5
M2_58
129.6
M2_59
128.9
M2_60
127.2
M2_61
122.7
M2_62
117.8
M2_63
117.8
M2_64
117.3
M2_65
115.2
M2_66
115.1
M2_67
114.5
M2_68
113.8
M2_69
112.5
M2_70
111.3
M2_71
108.2
M2_72
106.0
M2_73
105.4
M2_74
103.6
M2_75
102.3
M2_76
102.0
M2_77
101.0
M2_78
94.2
M2_79
92.0
M2_80
91.3
M2_81
86.6
M2_82
86.5
M2_83
84.5
M2_84
82.2
M2_85
81.0
M2_86
78.6
M2_87
75.4
M2_88
72.0
M2_89
69.2
M2_90
62.4
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