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BETA
  • SUMMARY

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  • BRAIN

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  • CIRBP
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:269.0 nTPM
Monaco:484.2 nTPM
Schmiedel:226.9 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

269.0
HPA sample nTPM
Memory B-cell
nTPM: 249.7
Samples: 6

Max nTPM: 294.0
Min nTPM: 214.7
P10809_1017 214.7
P10809_1025 294.0
P10809_1044 257.7
P10809_1063 216.9
P10809_1092 264.2
P10809_1105 250.4
Naive B-cell
nTPM: 269.0
Samples: 6

Max nTPM: 336.3
Min nTPM: 229.6
P10809_1011 229.7
P10809_1029 336.3
P10809_1048 229.6
P10809_1067 252.5
P10809_1091 270.6
P10809_1104 295.4

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

484.2
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 404.5
Samples: 4

Max nTPM: 478.8
Min nTPM: 229.1
RHH5310_R3677 478.8
RHH5218_R3590 462.5
RHH5247_R3619 447.7
RHH5276_R3648 229.1
Naive B-cell
nTPM: 484.2
Samples: 4

Max nTPM: 635.9
Min nTPM: 370.3
RHH5308_R3675 535.4
RHH5216_R3588 635.9
RHH5245_R3617 370.3
RHH5274_R3646 395.2
Non-switched memory B-cell
nTPM: 459.1
Samples: 4

Max nTPM: 549.6
Min nTPM: 290.8
RHH5309_R3676 530.6
RHH5217_R3589 465.2
RHH5246_R3618 549.6
RHH5275_R3647 290.8
Plasmablast
nTPM: 258.8
Samples: 4

Max nTPM: 339.1
Min nTPM: 151.5
RHH5312_R3679 273.6
RHH5220_R3592 271.1
RHH5249_R3621 339.1
RHH5278_R3650 151.5
Switched memory B-cell
nTPM: 449.6
Samples: 4

Max nTPM: 538.9
Min nTPM: 247.3
RHH5311_R3678 503.0
RHH5219_R3591 538.9
RHH5248_R3620 509.3
RHH5277_R3649 247.3

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

226.9
Schmiedel sample id TPM
Naive B-cell
TPM: 226.9
Samples: 91

Max TPM: 284.4
Min TPM: 122.6
B_CELL_NAIVE_1 284.4
B_CELL_NAIVE_2 280.1
B_CELL_NAIVE_3 279.5
B_CELL_NAIVE_4 270.2
B_CELL_NAIVE_5 268.5
B_CELL_NAIVE_6 268.3
B_CELL_NAIVE_7 267.2
B_CELL_NAIVE_8 266.2
B_CELL_NAIVE_9 265.7
B_CELL_NAIVE_10 265.7
B_CELL_NAIVE_11 265.4
B_CELL_NAIVE_12 265.3
B_CELL_NAIVE_13 264.4
B_CELL_NAIVE_14 264.4
B_CELL_NAIVE_15 261.8
B_CELL_NAIVE_16 261.2
B_CELL_NAIVE_17 254.3
B_CELL_NAIVE_18 254.1
B_CELL_NAIVE_19 254.0
B_CELL_NAIVE_20 252.3
B_CELL_NAIVE_21 250.4
B_CELL_NAIVE_22 249.8
B_CELL_NAIVE_23 249.5
B_CELL_NAIVE_24 249.3
B_CELL_NAIVE_25 248.2
B_CELL_NAIVE_26 246.4
B_CELL_NAIVE_27 246.4
B_CELL_NAIVE_28 244.8
B_CELL_NAIVE_29 244.4
B_CELL_NAIVE_30 243.3
B_CELL_NAIVE_31 242.9
B_CELL_NAIVE_32 242.7
B_CELL_NAIVE_33 242.2
B_CELL_NAIVE_34 242.2
B_CELL_NAIVE_35 240.8
B_CELL_NAIVE_36 240.4
B_CELL_NAIVE_37 240.1
B_CELL_NAIVE_38 240.1
B_CELL_NAIVE_39 239.7
B_CELL_NAIVE_40 238.3
B_CELL_NAIVE_41 237.8
B_CELL_NAIVE_42 237.8
B_CELL_NAIVE_43 237.6
B_CELL_NAIVE_44 237.3
B_CELL_NAIVE_45 235.9
B_CELL_NAIVE_46 235.0
B_CELL_NAIVE_47 234.1
B_CELL_NAIVE_48 233.1
B_CELL_NAIVE_49 232.7
B_CELL_NAIVE_50 229.4
B_CELL_NAIVE_51 229.1
B_CELL_NAIVE_52 228.3
B_CELL_NAIVE_53 227.6
B_CELL_NAIVE_54 227.0
B_CELL_NAIVE_55 226.3
B_CELL_NAIVE_56 225.9
B_CELL_NAIVE_57 223.6
B_CELL_NAIVE_58 222.7
B_CELL_NAIVE_59 221.0
B_CELL_NAIVE_60 220.4
B_CELL_NAIVE_61 218.5
B_CELL_NAIVE_62 217.5
B_CELL_NAIVE_63 216.0
B_CELL_NAIVE_64 215.2
B_CELL_NAIVE_65 214.0
B_CELL_NAIVE_66 214.0
B_CELL_NAIVE_67 213.9
B_CELL_NAIVE_68 210.8
B_CELL_NAIVE_69 208.4
B_CELL_NAIVE_70 205.0
B_CELL_NAIVE_71 203.4
B_CELL_NAIVE_72 202.8
B_CELL_NAIVE_73 202.1
B_CELL_NAIVE_74 202.1
B_CELL_NAIVE_75 199.5
B_CELL_NAIVE_76 198.6
B_CELL_NAIVE_77 198.5
B_CELL_NAIVE_78 193.3
B_CELL_NAIVE_79 191.8
B_CELL_NAIVE_80 185.7
B_CELL_NAIVE_81 182.0
B_CELL_NAIVE_82 180.5
B_CELL_NAIVE_83 174.8
B_CELL_NAIVE_84 168.5
B_CELL_NAIVE_85 168.0
B_CELL_NAIVE_86 167.4
B_CELL_NAIVE_87 153.2
B_CELL_NAIVE_88 149.2
B_CELL_NAIVE_89 138.3
B_CELL_NAIVE_90 134.8
B_CELL_NAIVE_91 122.6
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