A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
269.0
nTPM
Monaco:
484.2
nTPM
Schmiedel:
226.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
269.0
HPA sample
nTPM
Memory B-cell nTPM: 249.7
Samples: 6
Max nTPM: 294.0
Min nTPM: 214.7
P10809_1017
214.7
P10809_1025
294.0
P10809_1044
257.7
P10809_1063
216.9
P10809_1092
264.2
P10809_1105
250.4
Naive B-cell nTPM: 269.0
Samples: 6
Max nTPM: 336.3
Min nTPM: 229.6
P10809_1011
229.7
P10809_1029
336.3
P10809_1048
229.6
P10809_1067
252.5
P10809_1091
270.6
P10809_1104
295.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
484.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 404.5
Samples: 4
Max nTPM: 478.8
Min nTPM: 229.1
RHH5310_R3677
478.8
RHH5218_R3590
462.5
RHH5247_R3619
447.7
RHH5276_R3648
229.1
Naive B-cell nTPM: 484.2
Samples: 4
Max nTPM: 635.9
Min nTPM: 370.3
RHH5308_R3675
535.4
RHH5216_R3588
635.9
RHH5245_R3617
370.3
RHH5274_R3646
395.2
Non-switched memory B-cell nTPM: 459.1
Samples: 4
Max nTPM: 549.6
Min nTPM: 290.8
RHH5309_R3676
530.6
RHH5217_R3589
465.2
RHH5246_R3618
549.6
RHH5275_R3647
290.8
Plasmablast nTPM: 258.8
Samples: 4
Max nTPM: 339.1
Min nTPM: 151.5
RHH5312_R3679
273.6
RHH5220_R3592
271.1
RHH5249_R3621
339.1
RHH5278_R3650
151.5
Switched memory B-cell nTPM: 449.6
Samples: 4
Max nTPM: 538.9
Min nTPM: 247.3
RHH5311_R3678
503.0
RHH5219_R3591
538.9
RHH5248_R3620
509.3
RHH5277_R3649
247.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
226.9
Schmiedel sample id
TPM
Naive B-cell TPM: 226.9
Samples: 91
Max TPM: 284.4
Min TPM: 122.6
B_CELL_NAIVE_1
284.4
B_CELL_NAIVE_2
280.1
B_CELL_NAIVE_3
279.5
B_CELL_NAIVE_4
270.2
B_CELL_NAIVE_5
268.5
B_CELL_NAIVE_6
268.3
B_CELL_NAIVE_7
267.2
B_CELL_NAIVE_8
266.2
B_CELL_NAIVE_9
265.7
B_CELL_NAIVE_10
265.7
B_CELL_NAIVE_11
265.4
B_CELL_NAIVE_12
265.3
B_CELL_NAIVE_13
264.4
B_CELL_NAIVE_14
264.4
B_CELL_NAIVE_15
261.8
B_CELL_NAIVE_16
261.2
B_CELL_NAIVE_17
254.3
B_CELL_NAIVE_18
254.1
B_CELL_NAIVE_19
254.0
B_CELL_NAIVE_20
252.3
B_CELL_NAIVE_21
250.4
B_CELL_NAIVE_22
249.8
B_CELL_NAIVE_23
249.5
B_CELL_NAIVE_24
249.3
B_CELL_NAIVE_25
248.2
B_CELL_NAIVE_26
246.4
B_CELL_NAIVE_27
246.4
B_CELL_NAIVE_28
244.8
B_CELL_NAIVE_29
244.4
B_CELL_NAIVE_30
243.3
B_CELL_NAIVE_31
242.9
B_CELL_NAIVE_32
242.7
B_CELL_NAIVE_33
242.2
B_CELL_NAIVE_34
242.2
B_CELL_NAIVE_35
240.8
B_CELL_NAIVE_36
240.4
B_CELL_NAIVE_37
240.1
B_CELL_NAIVE_38
240.1
B_CELL_NAIVE_39
239.7
B_CELL_NAIVE_40
238.3
B_CELL_NAIVE_41
237.8
B_CELL_NAIVE_42
237.8
B_CELL_NAIVE_43
237.6
B_CELL_NAIVE_44
237.3
B_CELL_NAIVE_45
235.9
B_CELL_NAIVE_46
235.0
B_CELL_NAIVE_47
234.1
B_CELL_NAIVE_48
233.1
B_CELL_NAIVE_49
232.7
B_CELL_NAIVE_50
229.4
B_CELL_NAIVE_51
229.1
B_CELL_NAIVE_52
228.3
B_CELL_NAIVE_53
227.6
B_CELL_NAIVE_54
227.0
B_CELL_NAIVE_55
226.3
B_CELL_NAIVE_56
225.9
B_CELL_NAIVE_57
223.6
B_CELL_NAIVE_58
222.7
B_CELL_NAIVE_59
221.0
B_CELL_NAIVE_60
220.4
B_CELL_NAIVE_61
218.5
B_CELL_NAIVE_62
217.5
B_CELL_NAIVE_63
216.0
B_CELL_NAIVE_64
215.2
B_CELL_NAIVE_65
214.0
B_CELL_NAIVE_66
214.0
B_CELL_NAIVE_67
213.9
B_CELL_NAIVE_68
210.8
B_CELL_NAIVE_69
208.4
B_CELL_NAIVE_70
205.0
B_CELL_NAIVE_71
203.4
B_CELL_NAIVE_72
202.8
B_CELL_NAIVE_73
202.1
B_CELL_NAIVE_74
202.1
B_CELL_NAIVE_75
199.5
B_CELL_NAIVE_76
198.6
B_CELL_NAIVE_77
198.5
B_CELL_NAIVE_78
193.3
B_CELL_NAIVE_79
191.8
B_CELL_NAIVE_80
185.7
B_CELL_NAIVE_81
182.0
B_CELL_NAIVE_82
180.5
B_CELL_NAIVE_83
174.8
B_CELL_NAIVE_84
168.5
B_CELL_NAIVE_85
168.0
B_CELL_NAIVE_86
167.4
B_CELL_NAIVE_87
153.2
B_CELL_NAIVE_88
149.2
B_CELL_NAIVE_89
138.3
B_CELL_NAIVE_90
134.8
B_CELL_NAIVE_91
122.6
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