A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
229.9
nTPM
Monaco:
362.3
nTPM
Schmiedel:
212.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
229.9
HPA sample
nTPM
NK-cell nTPM: 229.9
Samples: 6
Max nTPM: 298.1
Min nTPM: 107.4
P10809_1013
201.4
P10809_1033
298.1
P10809_1052
219.4
P10809_1071
261.1
P10809_1093
107.4
P10809_1103
291.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
362.3
Monaco sample
nTPM
NK-cell nTPM: 362.3
Samples: 4
Max nTPM: 452.6
Min nTPM: 260.2
RHH5316_R3683
423.6
RHH5224_R3596
452.6
RHH5253_R3625
260.2
RHH5282_R3654
312.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
212.2
Schmiedel sample id
TPM
NK-cell TPM: 212.2
Samples: 90
Max TPM: 273.2
Min TPM: 154.9
NK_1
273.2
NK_2
256.7
NK_3
243.9
NK_4
243.9
NK_5
239.2
NK_6
238.2
NK_7
236.6
NK_8
236.3
NK_9
235.7
NK_10
234.8
NK_11
233.5
NK_12
233.3
NK_13
232.9
NK_14
232.9
NK_15
232.6
NK_16
232.2
NK_17
232.1
NK_18
231.7
NK_19
230.5
NK_20
230.0
NK_21
229.9
NK_22
229.7
NK_23
229.7
NK_24
229.4
NK_25
229.0
NK_26
228.1
NK_27
228.0
NK_28
227.5
NK_29
227.0
NK_30
226.3
NK_31
225.6
NK_32
224.5
NK_33
223.9
NK_34
222.4
NK_35
222.2
NK_36
221.9
NK_37
221.4
NK_38
220.9
NK_39
218.3
NK_40
218.1
NK_41
217.5
NK_42
216.9
NK_43
216.6
NK_44
216.3
NK_45
216.0
NK_46
215.8
NK_47
215.7
NK_48
215.6
NK_49
213.9
NK_50
213.0
NK_51
212.3
NK_52
211.7
NK_53
211.5
NK_54
209.3
NK_55
209.3
NK_56
209.1
NK_57
207.4
NK_58
204.0
NK_59
202.6
NK_60
202.2
NK_61
202.1
NK_62
201.1
NK_63
200.8
NK_64
200.4
NK_65
200.2
NK_66
199.8
NK_67
197.9
NK_68
197.6
NK_69
197.5
NK_70
197.2
NK_71
197.1
NK_72
196.4
NK_73
194.3
NK_74
192.7
NK_75
191.8
NK_76
190.1
NK_77
188.1
NK_78
186.0
NK_79
182.9
NK_80
182.8
NK_81
182.3
NK_82
178.8
NK_83
176.3
NK_84
175.9
NK_85
172.8
NK_86
169.0
NK_87
166.2
NK_88
165.5
NK_89
160.7
NK_90
154.9
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