A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
238.3
nTPM
Monaco:
352.2
nTPM
Schmiedel:
172.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
238.3
HPA sample
nTPM
Classical monocyte nTPM: 88.6
Samples: 6
Max nTPM: 132.6
Min nTPM: 59.8
P10809_1003
111.9
P10809_1020
132.6
P10809_1039
73.8
P10809_1058
70.6
P10809_1080
59.8
P10809_1107
82.6
Intermediate monocyte nTPM: 153.7
Samples: 6
Max nTPM: 242.5
Min nTPM: 97.4
P10809_1004
176.7
P10809_1023
242.5
P10809_1042
135.0
P10809_1061
97.4
P10809_1081
113.4
P10809_1108
157.2
Non-classical monocyte nTPM: 238.3
Samples: 5
Max nTPM: 272.9
Min nTPM: 190.3
P10809_1005
272.9
P10809_1053
229.1
P10809_1072
239.1
P10809_1082
190.3
P10809_1109
260.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
352.2
Monaco sample
nTPM
Classical monocyte nTPM: 171.9
Samples: 4
Max nTPM: 212.4
Min nTPM: 117.6
RHH5313_R3680
185.2
RHH5221_R3593
117.6
RHH5250_R3622
212.4
RHH5279_R3651
172.3
Intermediate monocyte nTPM: 277.2
Samples: 4
Max nTPM: 319.0
Min nTPM: 194.3
RHH5314_R3681
319.0
RHH5222_R3594
194.3
RHH5251_R3623
309.6
RHH5280_R3652
286.0
Non-classical monocyte nTPM: 352.2
Samples: 4
Max nTPM: 409.9
Min nTPM: 251.7
RHH5315_R3682
376.3
RHH5223_R3595
251.7
RHH5252_R3624
370.9
RHH5281_R3653
409.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
172.2
Schmiedel sample id
TPM
Classical monocyte TPM: 92.3
Samples: 91
Max TPM: 120.2
Min TPM: 61.7
MONOCYTES_1
120.2
MONOCYTES_2
119.7
MONOCYTES_3
118.8
MONOCYTES_4
111.5
MONOCYTES_5
111.5
MONOCYTES_6
109.8
MONOCYTES_7
109.7
MONOCYTES_8
107.9
MONOCYTES_9
106.4
MONOCYTES_10
106.4
MONOCYTES_11
106.3
MONOCYTES_12
106.0
MONOCYTES_13
105.5
MONOCYTES_14
105.3
MONOCYTES_15
104.4
MONOCYTES_16
104.2
MONOCYTES_17
103.7
MONOCYTES_18
102.8
MONOCYTES_19
101.7
MONOCYTES_20
100.9
MONOCYTES_21
100.3
MONOCYTES_22
99.5
MONOCYTES_23
99.4
MONOCYTES_24
99.1
MONOCYTES_25
98.3
MONOCYTES_26
98.0
MONOCYTES_27
97.9
MONOCYTES_28
97.9
MONOCYTES_29
97.7
MONOCYTES_30
97.6
MONOCYTES_31
97.5
MONOCYTES_32
97.4
MONOCYTES_33
97.2
MONOCYTES_34
96.9
MONOCYTES_35
96.7
MONOCYTES_36
96.5
MONOCYTES_37
95.9
MONOCYTES_38
95.8
MONOCYTES_39
95.5
MONOCYTES_40
95.0
MONOCYTES_41
94.8
MONOCYTES_42
94.1
MONOCYTES_43
93.5
MONOCYTES_44
92.9
MONOCYTES_45
92.6
MONOCYTES_46
92.6
MONOCYTES_47
92.1
MONOCYTES_48
91.8
MONOCYTES_49
91.6
MONOCYTES_50
91.4
MONOCYTES_51
91.3
MONOCYTES_52
91.2
MONOCYTES_53
90.4
MONOCYTES_54
90.3
MONOCYTES_55
90.3
MONOCYTES_56
89.6
MONOCYTES_57
89.5
MONOCYTES_58
89.2
MONOCYTES_59
89.2
MONOCYTES_60
87.6
MONOCYTES_61
86.9
MONOCYTES_62
86.9
MONOCYTES_63
86.2
MONOCYTES_64
86.2
MONOCYTES_65
86.0
MONOCYTES_66
85.7
MONOCYTES_67
84.8
MONOCYTES_68
84.1
MONOCYTES_69
83.4
MONOCYTES_70
83.4
MONOCYTES_71
83.1
MONOCYTES_72
82.8
MONOCYTES_73
82.3
MONOCYTES_74
80.7
MONOCYTES_75
80.7
MONOCYTES_76
80.4
MONOCYTES_77
78.9
MONOCYTES_78
78.8
MONOCYTES_79
77.5
MONOCYTES_80
77.5
MONOCYTES_81
77.3
MONOCYTES_82
76.8
MONOCYTES_83
76.7
MONOCYTES_84
75.8
MONOCYTES_85
74.1
MONOCYTES_86
73.6
MONOCYTES_87
72.7
MONOCYTES_88
72.6
MONOCYTES_89
69.8
MONOCYTES_90
68.6
MONOCYTES_91
61.7
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Non-classical monocyte TPM: 172.2
Samples: 90
Max TPM: 237.2
Min TPM: 120.5
M2_1
237.2
M2_2
223.1
M2_3
213.4
M2_4
213.4
M2_5
213.2
M2_6
203.6
M2_7
203.4
M2_8
201.0
M2_9
199.5
M2_10
198.8
M2_11
198.5
M2_12
197.3
M2_13
197.2
M2_14
196.8
M2_15
194.9
M2_16
190.7
M2_17
190.6
M2_18
190.5
M2_19
190.2
M2_20
188.3
M2_21
188.0
M2_22
187.9
M2_23
187.5
M2_24
187.3
M2_25
187.3
M2_26
186.8
M2_27
186.3
M2_28
186.1
M2_29
185.5
M2_30
184.3
M2_31
183.7
M2_32
183.2
M2_33
182.8
M2_34
182.5
M2_35
182.2
M2_36
180.7
M2_37
180.5
M2_38
180.0
M2_39
179.9
M2_40
178.7
M2_41
178.3
M2_42
178.3
M2_43
178.1
M2_44
177.5
M2_45
173.9
M2_46
173.6
M2_47
171.8
M2_48
171.7
M2_49
170.5
M2_50
169.2
M2_51
169.2
M2_52
168.5
M2_53
168.4
M2_54
167.7
M2_55
167.2
M2_56
166.0
M2_57
165.5
M2_58
165.2
M2_59
164.7
M2_60
164.4
M2_61
163.7
M2_62
163.7
M2_63
163.3
M2_64
163.0
M2_65
160.9
M2_66
159.6
M2_67
159.6
M2_68
158.0
M2_69
157.8
M2_70
154.5
M2_71
154.1
M2_72
151.5
M2_73
149.7
M2_74
145.6
M2_75
145.1
M2_76
144.5
M2_77
143.6
M2_78
142.1
M2_79
142.0
M2_80
139.3
M2_81
138.9
M2_82
135.1
M2_83
134.5
M2_84
134.0
M2_85
133.3
M2_86
133.0
M2_87
129.3
M2_88
123.1
M2_89
121.5
M2_90
120.5
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