MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.7 nTPM
HPA Brain:78.4 nTPM
GTEx:13.7 nTPM
FANTOM5:11.4 Scaled Tags Per Million
Pig:22.9 nTPM
Mouse:38.1 nTPM
Allen mouse:6.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 78.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.0
2666 Male, age 74, left hemisphere 105.0
2828 Female, age 72, unknown 76.8
2586 Male, age 75, left hemisphere 76.0
1827 Male, age 72, unknown 75.6
2219 Male, age 76, both hemispheres 73.1
2019 Male, age 18, unknown 55.6
2411 Female, age 72, unknown 53.8
1833 Male, age 53, unknown 47.1
1870 Female, age 42, unknown 46.9
1830 Male, age 51, unknown 40.5
Dorsal raphe nucleus
nTPM: 54.4
2298 Female, age 72, unknown 66.0
2047 Male, age 72, unknown 58.8
2750 Male, age 76, both hemispheres 55.7
1828 Male, age 53, unknown 52.1
2016 Female, age 72, unknown 39.6
Inferior colliculus
nTPM: 45.6
2849 Male, age 72, unknown 50.0
1848 Female, age 42, unknown 46.8
2097 Female, age 72, unknown 43.4
1890 Male, age 53, unknown 42.1
Median raphe nucleus
nTPM: 65.9
2220 Male, age 76, midline 65.9
Periaquaductal grey, anterior
nTPM: 78.4
1795 Male, age 51, unknown 92.0
1947 Male, age 18, unknown 71.8
2502 Female, age 75, unknown 71.5
Periaquaductal grey, dorsal
nTPM: 50.9
1840 Male, age 53, unknown 57.7
2464 Female, age 72, unknown 49.4
1831 Male, age 72, unknown 48.4
2850 Male, age 76, both hemispheres 48.1
Periaquaductal grey, lateral
nTPM: 44.2
2140 Male, age 76, both hemispheres 46.8
2053 Male, age 18, unknown 44.8
2272 Male, age 74, both hemispheres 40.9
Pretectal area
nTPM: 61.0
1816 Male, age 51, unknown 95.2
2007 Male, age 72, unknown 85.7
1817 Female, age 42, unknown 73.5
1944 Female, age 72, unknown 72.8
1815 Male, age 53, unknown 71.5
2224 Female, age 72, unknown 54.0
2825 Male, age 18, unknown 51.8
2667 Female, age 75, unknown 46.3
2407 Male, age 75, both hemispheres 44.6
2316 Male, age 76, right hemisphere 43.3
2273 Male, age 74, both hemispheres 31.8
Red nucleus
nTPM: 37.3
2584 Male, age 75, left hemisphere 62.7
2785 Male, age 18, unknown 53.8
2588 Male, age 74, left hemisphere 42.2
2769 Male, age 72, unknown 36.8
2227 Male, age 72, unknown 35.7
2823 Male, age 76, right hemisphere 34.8
1954 Female, age 42, unknown 32.3
1821 Female, age 72, unknown 31.9
2503 Female, age 72, unknown 31.9
1904 Male, age 53, unknown 30.7
1865 Male, age 51, unknown 27.9
2725 Female, age 75, unknown 26.6
Substantia nigra
nTPM: 61.9
2665 Male, age 74, both hemispheres 91.8
1916 Female, age 42, unknown 88.7
1851 Male, age 51, unknown 71.7
1941 Male, age 53, unknown 63.2
1889 Female, age 72, unknown 62.6
2583 Male, age 75, right hemisphere 54.8
2241 Male, age 72, unknown 51.3
2409 Female, age 72, unknown 49.6
2699 Male, age 18, unknown 48.6
2590 Female, age 75, unknown 36.6
Superior colliculus
nTPM: 67.3
2668 Female, age 75, unknown 178.5
1796 Male, age 53, unknown 79.7
2261 Male, age 18, unknown 66.8
2087 Female, age 72, unknown 65.8
2664 Male, age 75, both hemispheres 61.3
1839 Male, age 51, unknown 52.9
1895 Male, age 76, right hemisphere 51.4
2587 Male, age 74, left hemisphere 42.3
1913 Female, age 42, unknown 40.9
1995 Male, age 72, unknown 33.7
Ventral tegmental area
nTPM: 58.5
2218 Male, age 76, both hemispheres 70.7
1915 Female, age 42, unknown 61.9
2410 Female, age 72, unknown 61.0
1942 Male, age 51, unknown 56.3
2021 Male, age 53, unknown 51.2
2223 Female, age 72, unknown 49.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 13.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.7
Samples: 183

Max nTPM: 43.8
Min nTPM: 2.4
Std nTPM: 8.6
Median nTPM: 11.5
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 43.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 37.3
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 37.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 36.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 34.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 32.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 31.7
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 31.6
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 30.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 30.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 30.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 11.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.4
FF:10158-103A5 76 years, female 11.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 22.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.5
Samples: 4

Max nTPM: 22.2
Min nTPM: 5.5
Sample A Female 22.2
Sample B Female 12.2
Sample C Male 22.0
Sample D Male 5.5
Midbrain
nTPM: 22.5
Samples: 4

Max nTPM: 44.7
Min nTPM: 3.9
Sample A Female 3.9
Sample B Female 14.2
Sample C Male 44.7
Sample D Male 27.1
Periaqueductal gray
nTPM: 17.1
Samples: 3

Max nTPM: 22.0
Min nTPM: 13.7
Sample B Female 15.5
Sample C Male 22.0
Sample D Male 13.7
Superior colliculi
nTPM: 22.9
Samples: 4

Max nTPM: 28.3
Min nTPM: 17.8
Sample A Female 20.1
Sample B Female 17.8
Sample C Male 28.3
Sample D Male 25.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 38.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.1
Samples: 4

Max nTPM: 41.9
Min nTPM: 34.9
Sample A Male 41.9
Sample B Male 35.9
Sample C Female 34.9
Sample D Female 39.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.4
68667377 Antisense, RP_050201_02_B07, Mouse strain C57BL/6J (56 days, male) 6.4

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