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CEP170B
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  • CEP170B
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:8.5 nTPM
HPA Brain:41.9 nTPM
GTEx:8.5 nTPM
FANTOM5:26.7 Scaled Tags Per Million
Pig:12.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

41.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 33.5
2194 Female, age 79, both hemispheres 46.8
2816 Male, age 47, midline 33.3
2565 Male, age 75, midline 32.9
1981 Female, age 72, midline 29.0
2048 Male, age 55, midline 25.5
Cervical spinal cord, dorsal horn
nTPM: 36.0
2297 Male, age 75, both hemispheres 52.4
2721 Male, age 90, both hemispheres 48.9
1877 Male, age 55, unknown 39.4
2173 Female, age 72, unknown 29.3
2069 Male, age 47, both hemispheres 26.5
2296 Male, age 66, both hemispheres 19.5
Cervical spinal cord, ventral horn
nTPM: 41.9
2820 Female, age 79, both hemispheres 72.9
2068 Male, age 55, unknown 51.5
2295 Male, age 66, both hemispheres 41.2
2480 Male, age 75, both hemispheres 40.3
2809 Male, age 90, both hemispheres 30.0
2098 Female, age 72, unknown 15.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 8.5
Samples: 204

Max nTPM: 22.2
Min nTPM: 3.4
Std nTPM: 3.1
Median nTPM: 7.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 22.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 20.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 18.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 18.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 17.8
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 17.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 15.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 15.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 14.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 14.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 14.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 13.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 13.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 13.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 13.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 13.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 13.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 13.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 12.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 12.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 12.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 12.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 12.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 12.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 12.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 12.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 12.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 12.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 12.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 11.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 11.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 11.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 11.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 11.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 11.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 11.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 11.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 10.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 10.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 10.8
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 10.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 10.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 10.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 10.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 10.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 10.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 10.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 10.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 10.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 10.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 10.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 10.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 10.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 10.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 9.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 9.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 9.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 9.5
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 9.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 9.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 9.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 9.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 9.3
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 9.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 9.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 9.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 9.0
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 9.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 8.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 8.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 8.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 8.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 8.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 8.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 8.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 8.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 8.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 8.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 8.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 8.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 8.6
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 8.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 8.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 8.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 8.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 8.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 8.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 8.4
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 8.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 8.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 8.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 8.3
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 8.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 8.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 8.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 8.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 8.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 8.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 8.1
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 8.0
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 8.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 7.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 7.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 7.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 7.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 7.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 7.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 7.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 7.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 7.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 7.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 7.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 7.5
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 7.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 7.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 7.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 7.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 7.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 7.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 7.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 7.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 7.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 7.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 7.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 7.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 7.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 7.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 7.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 7.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 7.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 7.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 7.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 7.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 6.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 6.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 6.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 6.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 6.9
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 6.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 6.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 6.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 6.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 6.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 6.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 6.6
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 6.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 6.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 6.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 6.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 6.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 6.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 6.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 6.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 6.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 6.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 6.3
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 6.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 6.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 6.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 6.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 6.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 6.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 6.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 6.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 6.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 6.0
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 6.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 6.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 5.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 5.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 5.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 5.8
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 5.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 5.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 5.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 5.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 5.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 5.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 5.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 5.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 5.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 5.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 5.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 5.0
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 5.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 4.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 4.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 4.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 4.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 4.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 4.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 4.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 4.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 4.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 4.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 4.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 4.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 4.1
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 4.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 4.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 3.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 3.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 3.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 3.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

26.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 26.7
FF:10181-103D1 60 years, female 38.5
FF:10159-103A6 76 years, female 14.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 9.7
Samples: 4

Max nTPM: 16.4
Min nTPM: 4.7
Sample A Female 16.4
Sample B Female 4.7
Sample C Male 5.3
Sample D Male 12.3
Ventral spinal cord
nTPM: 12.1
Samples: 4

Max nTPM: 14.7
Min nTPM: 6.7
Sample A Female 14.7
Sample B Female 13.5
Sample C Male 13.6
Sample D Male 6.7

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