A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
151.2
nTPM
Monaco:
187.9
nTPM
Schmiedel:
63.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
151.2
HPA sample
nTPM
Memory B-cell nTPM: 144.1
Samples: 6
Max nTPM: 281.9
Min nTPM: 91.9
P10809_1017
91.9
P10809_1025
143.0
P10809_1044
281.9
P10809_1063
112.6
P10809_1092
122.3
P10809_1105
112.9
Naive B-cell nTPM: 151.2
Samples: 6
Max nTPM: 382.7
Min nTPM: 71.2
P10809_1011
71.2
P10809_1029
126.3
P10809_1048
382.7
P10809_1067
85.2
P10809_1091
126.5
P10809_1104
115.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
187.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 130.9
Samples: 4
Max nTPM: 155.9
Min nTPM: 103.4
RHH5310_R3677
155.9
RHH5218_R3590
124.2
RHH5247_R3619
139.9
RHH5276_R3648
103.4
Naive B-cell nTPM: 108.8
Samples: 4
Max nTPM: 162.2
Min nTPM: 82.9
RHH5308_R3675
84.7
RHH5216_R3588
162.2
RHH5245_R3617
82.9
RHH5274_R3646
105.4
Non-switched memory B-cell nTPM: 130.6
Samples: 4
Max nTPM: 153.6
Min nTPM: 112.0
RHH5309_R3676
112.0
RHH5217_R3589
138.4
RHH5246_R3618
153.6
RHH5275_R3647
118.5
Plasmablast nTPM: 187.9
Samples: 4
Max nTPM: 213.9
Min nTPM: 151.6
RHH5312_R3679
195.3
RHH5220_R3592
213.9
RHH5249_R3621
190.7
RHH5278_R3650
151.6
Switched memory B-cell nTPM: 135.5
Samples: 4
Max nTPM: 171.3
Min nTPM: 104.1
RHH5311_R3678
135.1
RHH5219_R3591
171.3
RHH5248_R3620
131.4
RHH5277_R3649
104.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
63.3
Schmiedel sample id
TPM
Naive B-cell TPM: 63.3
Samples: 91
Max TPM: 84.7
Min TPM: 34.6
B_CELL_NAIVE_1
84.7
B_CELL_NAIVE_2
81.2
B_CELL_NAIVE_3
75.1
B_CELL_NAIVE_4
73.7
B_CELL_NAIVE_5
72.3
B_CELL_NAIVE_6
72.1
B_CELL_NAIVE_7
71.5
B_CELL_NAIVE_8
71.5
B_CELL_NAIVE_9
70.5
B_CELL_NAIVE_10
70.4
B_CELL_NAIVE_11
70.0
B_CELL_NAIVE_12
70.0
B_CELL_NAIVE_13
69.8
B_CELL_NAIVE_14
69.7
B_CELL_NAIVE_15
69.3
B_CELL_NAIVE_16
69.1
B_CELL_NAIVE_17
68.8
B_CELL_NAIVE_18
68.2
B_CELL_NAIVE_19
68.0
B_CELL_NAIVE_20
67.9
B_CELL_NAIVE_21
67.8
B_CELL_NAIVE_22
67.6
B_CELL_NAIVE_23
67.5
B_CELL_NAIVE_24
67.3
B_CELL_NAIVE_25
67.3
B_CELL_NAIVE_26
67.3
B_CELL_NAIVE_27
67.2
B_CELL_NAIVE_28
66.9
B_CELL_NAIVE_29
66.9
B_CELL_NAIVE_30
66.7
B_CELL_NAIVE_31
66.6
B_CELL_NAIVE_32
66.3
B_CELL_NAIVE_33
65.9
B_CELL_NAIVE_34
65.9
B_CELL_NAIVE_35
65.8
B_CELL_NAIVE_36
65.7
B_CELL_NAIVE_37
65.7
B_CELL_NAIVE_38
65.7
B_CELL_NAIVE_39
65.6
B_CELL_NAIVE_40
65.4
B_CELL_NAIVE_41
65.3
B_CELL_NAIVE_42
65.3
B_CELL_NAIVE_43
64.7
B_CELL_NAIVE_44
64.3
B_CELL_NAIVE_45
64.2
B_CELL_NAIVE_46
64.1
B_CELL_NAIVE_47
63.9
B_CELL_NAIVE_48
63.8
B_CELL_NAIVE_49
63.5
B_CELL_NAIVE_50
63.2
B_CELL_NAIVE_51
63.2
B_CELL_NAIVE_52
62.3
B_CELL_NAIVE_53
62.1
B_CELL_NAIVE_54
62.1
B_CELL_NAIVE_55
61.9
B_CELL_NAIVE_56
61.9
B_CELL_NAIVE_57
61.7
B_CELL_NAIVE_58
61.6
B_CELL_NAIVE_59
60.6
B_CELL_NAIVE_60
60.6
B_CELL_NAIVE_61
60.6
B_CELL_NAIVE_62
60.5
B_CELL_NAIVE_63
60.3
B_CELL_NAIVE_64
60.3
B_CELL_NAIVE_65
60.2
B_CELL_NAIVE_66
60.1
B_CELL_NAIVE_67
59.7
B_CELL_NAIVE_68
59.6
B_CELL_NAIVE_69
59.2
B_CELL_NAIVE_70
58.9
B_CELL_NAIVE_71
58.6
B_CELL_NAIVE_72
58.3
B_CELL_NAIVE_73
57.7
B_CELL_NAIVE_74
57.6
B_CELL_NAIVE_75
57.4
B_CELL_NAIVE_76
57.3
B_CELL_NAIVE_77
57.2
B_CELL_NAIVE_78
57.0
B_CELL_NAIVE_79
56.9
B_CELL_NAIVE_80
56.7
B_CELL_NAIVE_81
56.0
B_CELL_NAIVE_82
54.7
B_CELL_NAIVE_83
54.6
B_CELL_NAIVE_84
54.4
B_CELL_NAIVE_85
54.1
B_CELL_NAIVE_86
52.1
B_CELL_NAIVE_87
51.8
B_CELL_NAIVE_88
50.5
B_CELL_NAIVE_89
50.2
B_CELL_NAIVE_90
43.9
B_CELL_NAIVE_91
34.6
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The Human Protein Atlas project is funded
