A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
151.3
nTPM
Monaco:
202.8
nTPM
Schmiedel:
84.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
151.3
HPA sample
nTPM
Classical monocyte nTPM: 135.5
Samples: 6
Max nTPM: 202.8
Min nTPM: 95.7
P10809_1003
113.2
P10809_1020
163.4
P10809_1039
202.8
P10809_1058
95.7
P10809_1080
120.7
P10809_1107
117.1
Intermediate monocyte nTPM: 151.3
Samples: 6
Max nTPM: 186.5
Min nTPM: 122.7
P10809_1004
138.3
P10809_1023
186.5
P10809_1042
177.0
P10809_1061
153.0
P10809_1081
122.7
P10809_1108
130.5
Non-classical monocyte nTPM: 119.1
Samples: 5
Max nTPM: 179.5
Min nTPM: 95.7
P10809_1005
102.7
P10809_1053
179.5
P10809_1072
97.2
P10809_1082
95.7
P10809_1109
120.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
202.8
Monaco sample
nTPM
Classical monocyte nTPM: 191.2
Samples: 4
Max nTPM: 298.0
Min nTPM: 151.3
RHH5313_R3680
153.4
RHH5221_R3593
298.0
RHH5250_R3622
151.3
RHH5279_R3651
162.0
Intermediate monocyte nTPM: 185.8
Samples: 4
Max nTPM: 223.5
Min nTPM: 162.7
RHH5314_R3681
162.7
RHH5222_R3594
223.5
RHH5251_R3623
168.7
RHH5280_R3652
188.2
Non-classical monocyte nTPM: 202.8
Samples: 4
Max nTPM: 278.5
Min nTPM: 155.1
RHH5315_R3682
192.4
RHH5223_R3595
278.5
RHH5252_R3624
155.1
RHH5281_R3653
185.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
84.6
Schmiedel sample id
TPM
Classical monocyte TPM: 67.7
Samples: 91
Max TPM: 109.0
Min TPM: 47.7
MONOCYTES_1
109.0
MONOCYTES_2
104.6
MONOCYTES_3
94.1
MONOCYTES_4
89.7
MONOCYTES_5
85.5
MONOCYTES_6
84.6
MONOCYTES_7
83.4
MONOCYTES_8
83.3
MONOCYTES_9
79.6
MONOCYTES_10
79.2
MONOCYTES_11
78.7
MONOCYTES_12
78.7
MONOCYTES_13
78.1
MONOCYTES_14
76.2
MONOCYTES_15
75.7
MONOCYTES_16
75.6
MONOCYTES_17
74.8
MONOCYTES_18
74.0
MONOCYTES_19
73.9
MONOCYTES_20
72.9
MONOCYTES_21
72.6
MONOCYTES_22
72.4
MONOCYTES_23
72.2
MONOCYTES_24
72.1
MONOCYTES_25
72.0
MONOCYTES_26
71.8
MONOCYTES_27
71.3
MONOCYTES_28
71.0
MONOCYTES_29
70.6
MONOCYTES_30
70.5
MONOCYTES_31
70.4
MONOCYTES_32
69.8
MONOCYTES_33
69.6
MONOCYTES_34
69.4
MONOCYTES_35
69.0
MONOCYTES_36
68.7
MONOCYTES_37
68.2
MONOCYTES_38
67.9
MONOCYTES_39
67.1
MONOCYTES_40
67.0
MONOCYTES_41
66.9
MONOCYTES_42
66.7
MONOCYTES_43
66.7
MONOCYTES_44
66.6
MONOCYTES_45
66.5
MONOCYTES_46
66.4
MONOCYTES_47
66.2
MONOCYTES_48
66.1
MONOCYTES_49
66.0
MONOCYTES_50
65.8
MONOCYTES_51
65.5
MONOCYTES_52
65.1
MONOCYTES_53
64.4
MONOCYTES_54
63.9
MONOCYTES_55
63.6
MONOCYTES_56
63.5
MONOCYTES_57
63.4
MONOCYTES_58
63.4
MONOCYTES_59
63.4
MONOCYTES_60
63.3
MONOCYTES_61
62.9
MONOCYTES_62
62.5
MONOCYTES_63
62.3
MONOCYTES_64
62.0
MONOCYTES_65
61.8
MONOCYTES_66
61.6
MONOCYTES_67
61.4
MONOCYTES_68
60.8
MONOCYTES_69
60.8
MONOCYTES_70
60.7
MONOCYTES_71
60.6
MONOCYTES_72
60.5
MONOCYTES_73
60.2
MONOCYTES_74
60.1
MONOCYTES_75
60.0
MONOCYTES_76
59.3
MONOCYTES_77
59.1
MONOCYTES_78
59.0
MONOCYTES_79
57.4
MONOCYTES_80
57.3
MONOCYTES_81
57.0
MONOCYTES_82
57.0
MONOCYTES_83
55.7
MONOCYTES_84
55.5
MONOCYTES_85
55.4
MONOCYTES_86
54.6
MONOCYTES_87
54.2
MONOCYTES_88
53.2
MONOCYTES_89
52.3
MONOCYTES_90
51.5
MONOCYTES_91
47.7
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Non-classical monocyte TPM: 84.6
Samples: 90
Max TPM: 135.5
Min TPM: 66.0
M2_1
135.5
M2_2
122.4
M2_3
119.0
M2_4
107.7
M2_5
100.2
M2_6
100.2
M2_7
98.9
M2_8
95.6
M2_9
93.5
M2_10
93.1
M2_11
92.8
M2_12
92.3
M2_13
92.1
M2_14
91.4
M2_15
91.3
M2_16
91.2
M2_17
90.6
M2_18
90.4
M2_19
90.2
M2_20
90.1
M2_21
89.9
M2_22
89.6
M2_23
89.5
M2_24
89.4
M2_25
89.3
M2_26
89.0
M2_27
88.8
M2_28
87.9
M2_29
87.8
M2_30
86.9
M2_31
86.5
M2_32
85.8
M2_33
85.3
M2_34
85.0
M2_35
85.0
M2_36
84.6
M2_37
83.8
M2_38
83.7
M2_39
83.5
M2_40
83.5
M2_41
83.5
M2_42
83.4
M2_43
83.4
M2_44
83.0
M2_45
82.7
M2_46
82.7
M2_47
82.5
M2_48
82.4
M2_49
82.4
M2_50
82.3
M2_51
81.9
M2_52
81.8
M2_53
81.6
M2_54
81.6
M2_55
81.6
M2_56
81.5
M2_57
81.0
M2_58
81.0
M2_59
80.7
M2_60
80.3
M2_61
80.1
M2_62
80.0
M2_63
79.8
M2_64
79.7
M2_65
79.5
M2_66
79.4
M2_67
79.3
M2_68
78.8
M2_69
78.4
M2_70
78.3
M2_71
77.5
M2_72
77.4
M2_73
76.7
M2_74
76.1
M2_75
76.0
M2_76
76.0
M2_77
75.5
M2_78
75.1
M2_79
74.8
M2_80
74.4
M2_81
74.3
M2_82
73.9
M2_83
73.8
M2_84
73.1
M2_85
71.3
M2_86
70.4
M2_87
69.8
M2_88
68.0
M2_89
67.8
M2_90
66.0
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