A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
126.0
nTPM
Monaco:
112.5
nTPM
Schmiedel:
75.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
126.0
HPA sample
nTPM
NK-cell nTPM: 125.9
Samples: 6
Max nTPM: 163.3
Min nTPM: 67.6
P10809_1013
67.6
P10809_1033
163.3
P10809_1052
141.8
P10809_1071
145.3
P10809_1093
98.8
P10809_1103
138.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
112.5
Monaco sample
nTPM
NK-cell nTPM: 112.5
Samples: 4
Max nTPM: 139.1
Min nTPM: 96.3
RHH5316_R3683
107.8
RHH5224_R3596
139.1
RHH5253_R3625
96.3
RHH5282_R3654
106.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
75.3
Schmiedel sample id
TPM
NK-cell TPM: 75.3
Samples: 90
Max TPM: 96.9
Min TPM: 59.6
NK_1
96.9
NK_2
95.3
NK_3
94.6
NK_4
91.0
NK_5
88.1
NK_6
87.9
NK_7
87.4
NK_8
86.9
NK_9
85.9
NK_10
85.6
NK_11
84.7
NK_12
84.3
NK_13
83.9
NK_14
83.0
NK_15
83.0
NK_16
82.9
NK_17
82.8
NK_18
82.7
NK_19
82.5
NK_20
82.1
NK_21
82.0
NK_22
81.8
NK_23
81.7
NK_24
81.6
NK_25
81.2
NK_26
80.9
NK_27
80.9
NK_28
80.8
NK_29
80.5
NK_30
80.0
NK_31
79.8
NK_32
79.5
NK_33
79.0
NK_34
79.0
NK_35
78.3
NK_36
78.2
NK_37
78.2
NK_38
77.5
NK_39
77.4
NK_40
76.3
NK_41
75.6
NK_42
75.4
NK_43
75.1
NK_44
74.6
NK_45
74.3
NK_46
73.7
NK_47
73.6
NK_48
73.3
NK_49
73.2
NK_50
72.8
NK_51
72.6
NK_52
72.3
NK_53
72.3
NK_54
72.0
NK_55
72.0
NK_56
71.9
NK_57
71.8
NK_58
71.8
NK_59
71.3
NK_60
70.8
NK_61
70.7
NK_62
70.0
NK_63
70.0
NK_64
69.8
NK_65
69.3
NK_66
69.3
NK_67
69.1
NK_68
68.0
NK_69
68.0
NK_70
67.6
NK_71
67.6
NK_72
67.5
NK_73
67.5
NK_74
67.4
NK_75
66.9
NK_76
66.5
NK_77
66.4
NK_78
66.2
NK_79
65.9
NK_80
65.6
NK_81
65.3
NK_82
65.2
NK_83
64.5
NK_84
64.2
NK_85
63.7
NK_86
62.8
NK_87
62.2
NK_88
61.5
NK_89
60.8
NK_90
59.6
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