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  • CYB5R3
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:135.4 nTPM
HPA Brain:167.7 nTPM
GTEx:135.4 nTPM
FANTOM5:177.9 Scaled Tags Per Million
Pig:195.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

167.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 159.4
2816 Male, age 47, midline 164.8
2048 Male, age 55, midline 160.5
2194 Female, age 79, both hemispheres 158.1
1981 Female, age 72, midline 157.3
2565 Male, age 75, midline 156.2
Cervical spinal cord, dorsal horn
nTPM: 148.2
2173 Female, age 72, unknown 198.5
2721 Male, age 90, both hemispheres 161.6
2296 Male, age 66, both hemispheres 160.1
1877 Male, age 55, unknown 129.8
2069 Male, age 47, both hemispheres 121.4
2297 Male, age 75, both hemispheres 117.5
Cervical spinal cord, ventral horn
nTPM: 167.7
2098 Female, age 72, unknown 199.0
2295 Male, age 66, both hemispheres 177.8
2809 Male, age 90, both hemispheres 172.1
2820 Female, age 79, both hemispheres 166.8
2480 Male, age 75, both hemispheres 166.1
2068 Male, age 55, unknown 124.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 135.4
Samples: 204

Max nTPM: 271.7
Min nTPM: 57.9
Std nTPM: 37.1
Median nTPM: 134.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 271.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 217.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 217.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 216.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 215.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 207.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 204.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 203.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 202.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 200.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 199.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 199.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 197.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 197.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 196.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 196.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 195.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 192.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 191.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 187.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 187.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 186.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 180.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 180.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 179.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 178.4
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 178.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 177.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 176.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 175.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 174.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 174.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 173.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 173.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 172.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 170.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 170.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 170.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 170.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 170.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 169.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 168.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 166.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 165.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 165.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 165.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 165.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 165.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 163.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 163.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 162.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 161.1
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 157.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 156.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 156.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 155.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 155.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 153.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 153.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 152.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 152.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 151.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 151.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 151.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 150.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 149.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 148.2
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 147.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 146.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 146.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 146.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 145.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 145.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 145.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 144.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 144.3
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 144.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 143.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 143.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 143.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 143.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 142.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 142.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 142.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 142.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 141.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 140.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 140.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 139.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 138.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 138.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 138.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 138.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 138.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 138.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 137.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 137.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 137.2
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 137.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 137.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 134.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 134.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 133.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 133.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 133.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 132.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 132.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 131.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 131.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 130.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 130.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 129.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 129.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 129.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 127.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 127.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 126.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 126.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 126.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 125.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 125.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 124.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 124.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 124.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 124.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 123.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 123.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 122.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 122.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 121.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 118.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 117.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 116.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 116.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 116.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 116.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 115.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 115.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 115.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 114.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 114.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 113.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 111.9
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 111.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 111.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 109.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 108.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 108.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 108.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 108.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 108.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 107.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 107.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 106.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 105.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 104.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 104.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 103.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 103.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 102.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 102.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 102.1
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 100.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 100.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 100.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 98.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 98.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 98.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 98.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 97.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 97.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 97.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 95.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 94.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 94.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 93.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 93.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 93.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 90.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 90.1
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 89.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 88.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 87.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 87.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 87.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 87.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 87.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 86.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 86.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 86.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 86.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 86.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 84.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 80.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 79.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 78.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 77.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 76.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 70.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 69.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 66.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 66.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 62.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 57.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

177.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 177.9
FF:10181-103D1 60 years, female 206.5
FF:10159-103A6 76 years, female 149.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

195.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 179.0
Samples: 4

Max nTPM: 252.6
Min nTPM: 144.8
Sample A Female 144.8
Sample B Female 168.9
Sample C Male 252.6
Sample D Male 149.7
Ventral spinal cord
nTPM: 195.0
Samples: 4

Max nTPM: 214.9
Min nTPM: 184.6
Sample A Female 193.7
Sample B Female 184.6
Sample C Male 214.9
Sample D Male 186.9

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