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  • RPL3
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1326.1 nTPM
HPA Brain:611.1 nTPM
GTEx:1326.1 nTPM
FANTOM5:69.6 Scaled Tags Per Million
Pig:213.2 nTPM
Mouse:917.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

611.1
Sample id Sample description nTPM
Amygdala
nTPM: 582.8
2695 Female, age 67, right hemisphere 745.2
2514 Male, age 75, right hemisphere 599.7
2517 Female, age 94, left hemisphere 561.4
1987 Female, age 91, left hemisphere 545.5
2814 Male, age 76, right hemisphere 462.0
Basal amygdala
nTPM: 520.2
2827 Female, age 67, right hemisphere 711.8
2609 Male, age 75, right hemisphere 566.3
2110 Male, age 80, left hemisphere 536.0
2685 Female, age 94, left hemisphere 460.2
2243 Female, age 91, right hemisphere 438.2
1955 Male, age 76, both hemispheres 408.5
Central amygdala
nTPM: 583.5
2826 Female, age 94, left hemisphere 952.0
2515 Male, age 75, right hemisphere 670.7
2239 Male, age 80, left hemisphere 466.3
1905 Male, age 76, both hemispheres 429.9
2701 Female, age 91, right hemisphere 398.7
Corticomedial amygdala
nTPM: 481.7
2428 Male, age 75, right hemisphere 604.8
2535 Female, age 67, right hemisphere 524.4
2829 Male, age 80, left hemisphere 522.5
2242 Female, age 91, right hemisphere 447.6
2429 Female, age 94, left hemisphere 416.9
2240 Male, age 76, both hemispheres 374.2
Lateral amygdala
nTPM: 611.1
2830 Female, age 67, right hemisphere 944.8
2516 Male, age 75, right hemisphere 690.7
2534 Female, age 94, left hemisphere 630.7
2256 Male, age 80, left hemisphere 525.7
2255 Female, age 91, right hemisphere 451.3
1883 Male, age 76, both hemispheres 423.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1326.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1326.1
Samples: 181

Max nTPM: 2923.7
Min nTPM: 754.5
Std nTPM: 355.0
Median nTPM: 1260.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2923.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 2649.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2464.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2457.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2321.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2215.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2189.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 2100.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 2062.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1966.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1943.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1939.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1931.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1910.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1875.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1868.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1757.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1733.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1729.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1726.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1710.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1705.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1692.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1684.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1679.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1670.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1668.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1662.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1639.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1620.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1616.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1608.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1569.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1559.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 1552.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1546.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1526.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1523.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1514.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1509.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1505.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1500.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1497.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1489.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 1485.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1450.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1445.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1434.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1433.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 1413.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1410.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1404.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1399.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1397.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1393.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1389.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1376.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 1374.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1373.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1368.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1367.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 1361.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1360.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1357.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1354.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1352.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1351.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1349.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1338.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1338.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1334.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1332.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 1331.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1327.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1326.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1325.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1317.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1317.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1312.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1309.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1299.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1293.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1291.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1282.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1275.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1273.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1271.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1267.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1262.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1260.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1260.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1260.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1259.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 1255.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1254.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1250.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1248.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1247.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 1246.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1242.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1239.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1229.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1220.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1218.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1216.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1202.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1196.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1190.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1188.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1184.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1180.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1172.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1171.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1171.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1166.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 1166.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1156.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1151.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1150.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1148.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1146.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1142.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1135.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1130.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1128.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 1126.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1121.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1121.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 1119.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1119.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1116.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1112.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1111.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 1106.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1094.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1091.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1090.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1086.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1082.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1074.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1070.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1070.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1070.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1059.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 1053.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1052.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1052.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1044.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1039.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1037.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1031.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1030.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 1029.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1015.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1011.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1002.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 999.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 988.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 986.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 980.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 970.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 961.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 943.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 938.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 938.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 934.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 927.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 927.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 920.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 919.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 915.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 903.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 898.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 879.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 876.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 870.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 857.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 845.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 831.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 771.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 754.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

69.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 69.6
FF:10151-102I7 76 years, female 69.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

213.2
Pig sample Sample description nTPM
Amygdala
nTPM: 213.1
Samples: 4

Max nTPM: 261.5
Min nTPM: 154.1
Sample A Female 261.5
Sample B Female 239.0
Sample C Male 197.9
Sample D Male 154.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

917.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 917.6
Samples: 4

Max nTPM: 943.9
Min nTPM: 890.4
Sample A Male 943.9
Sample B Male 943.9
Sample C Female 890.4
Sample D Female 892.1

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