MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1334.0 nTPM
HPA Brain:581.5 nTPM
GTEx:1334.0 nTPM
FANTOM5:77.2 Scaled Tags Per Million
Pig:315.2 nTPM
Mouse:904.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 581.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 560.5
2586 Male, age 75, left hemisphere 717.5
2666 Male, age 74, left hemisphere 647.8
2828 Female, age 72, unknown 605.3
1870 Female, age 42, unknown 577.1
2411 Female, age 72, unknown 554.1
1827 Male, age 72, unknown 543.1
1830 Male, age 51, unknown 523.6
1833 Male, age 53, unknown 513.3
2019 Male, age 18, unknown 489.7
2219 Male, age 76, both hemispheres 433.3
Dorsal raphe nucleus
nTPM: 539.7
2016 Female, age 72, unknown 593.7
2298 Female, age 72, unknown 561.6
1828 Male, age 53, unknown 548.0
2750 Male, age 76, both hemispheres 508.5
2047 Male, age 72, unknown 486.7
Inferior colliculus
nTPM: 555.4
1890 Male, age 53, unknown 568.2
2097 Female, age 72, unknown 556.0
1848 Female, age 42, unknown 551.8
2849 Male, age 72, unknown 545.7
Median raphe nucleus
nTPM: 479.9
2220 Male, age 76, midline 479.9
Periaquaductal grey, anterior
nTPM: 565.4
2502 Female, age 75, unknown 630.7
1795 Male, age 51, unknown 539.2
1947 Male, age 18, unknown 526.2
Periaquaductal grey, dorsal
nTPM: 524.8
1840 Male, age 53, unknown 630.9
1831 Male, age 72, unknown 518.3
2464 Female, age 72, unknown 515.3
2850 Male, age 76, both hemispheres 434.6
Periaquaductal grey, lateral
nTPM: 504.2
2053 Male, age 18, unknown 543.7
2140 Male, age 76, both hemispheres 491.7
2272 Male, age 74, both hemispheres 477.4
Pretectal area
nTPM: 486.3
2825 Male, age 18, unknown 567.7
2407 Male, age 75, both hemispheres 518.7
2007 Male, age 72, unknown 518.0
2316 Male, age 76, right hemisphere 502.8
2224 Female, age 72, unknown 499.0
2273 Male, age 74, both hemispheres 482.0
1817 Female, age 42, unknown 479.5
1815 Male, age 53, unknown 475.1
1816 Male, age 51, unknown 460.3
1944 Female, age 72, unknown 435.5
2667 Female, age 75, unknown 410.5
Red nucleus
nTPM: 579.5
2503 Female, age 72, unknown 698.2
2584 Male, age 75, left hemisphere 650.7
2769 Male, age 72, unknown 602.7
2588 Male, age 74, left hemisphere 599.5
2227 Male, age 72, unknown 597.9
1865 Male, age 51, unknown 593.4
1904 Male, age 53, unknown 577.5
1821 Female, age 72, unknown 574.7
2785 Male, age 18, unknown 543.5
2725 Female, age 75, unknown 540.4
1954 Female, age 42, unknown 529.4
2823 Male, age 76, right hemisphere 446.5
Substantia nigra
nTPM: 581.5
2665 Male, age 74, both hemispheres 700.2
1851 Male, age 51, unknown 642.9
2590 Female, age 75, unknown 618.2
2699 Male, age 18, unknown 617.7
2583 Male, age 75, right hemisphere 595.5
1916 Female, age 42, unknown 593.1
2241 Male, age 72, unknown 549.7
2409 Female, age 72, unknown 511.4
1889 Female, age 72, unknown 497.5
1941 Male, age 53, unknown 488.7
Superior colliculus
nTPM: 543.4
2664 Male, age 75, both hemispheres 630.8
2587 Male, age 74, left hemisphere 601.7
2668 Female, age 75, unknown 568.7
1995 Male, age 72, unknown 566.2
1796 Male, age 53, unknown 566.1
1839 Male, age 51, unknown 539.4
2261 Male, age 18, unknown 514.9
1913 Female, age 42, unknown 514.6
2087 Female, age 72, unknown 469.8
1895 Male, age 76, right hemisphere 461.4
Ventral tegmental area
nTPM: 546.3
1915 Female, age 42, unknown 606.9
1942 Male, age 51, unknown 556.4
2223 Female, age 72, unknown 555.6
2410 Female, age 72, unknown 551.0
2021 Male, age 53, unknown 536.6
2218 Male, age 76, both hemispheres 471.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1334.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1334.0
Samples: 183

Max nTPM: 2552.8
Min nTPM: 540.4
Std nTPM: 394.7
Median nTPM: 1266.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2552.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 2529.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2428.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 2287.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2276.2
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 2245.9
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 2243.9
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 2216.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2205.0
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 2181.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 2133.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 77.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.2
FF:10158-103A5 76 years, female 77.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 315.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 279.0
Samples: 4

Max nTPM: 317.6
Min nTPM: 240.8
Sample A Female 317.6
Sample B Female 312.3
Sample C Male 245.1
Sample D Male 240.8
Midbrain
nTPM: 289.1
Samples: 4

Max nTPM: 380.5
Min nTPM: 205.3
Sample A Female 380.5
Sample B Female 305.8
Sample C Male 264.7
Sample D Male 205.3
Periaqueductal gray
nTPM: 228.4
Samples: 3

Max nTPM: 258.7
Min nTPM: 193.9
Sample B Female 258.7
Sample C Male 232.5
Sample D Male 193.9
Superior colliculi
nTPM: 315.2
Samples: 4

Max nTPM: 427.9
Min nTPM: 255.3
Sample A Female 314.2
Sample B Female 427.9
Sample C Male 263.2
Sample D Male 255.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 904.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 904.9
Samples: 4

Max nTPM: 975.4
Min nTPM: 838.0
Sample A Male 975.4
Sample B Male 907.5
Sample C Female 838.0
Sample D Female 898.5

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