A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5650.9
nTPM
Monaco:
5578.5
nTPM
Schmiedel:
970.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5650.9
HPA sample
nTPM
Memory B-cell nTPM: 5650.9
Samples: 6
Max nTPM: 9140.2
Min nTPM: 4400.4
P10809_1017
4400.4
P10809_1025
5497.1
P10809_1044
9140.2
P10809_1063
5021.6
P10809_1092
5178.0
P10809_1105
4668.1
Naive B-cell nTPM: 5138.1
Samples: 6
Max nTPM: 10406.9
Min nTPM: 3400.9
P10809_1011
3400.9
P10809_1029
4815.9
P10809_1048
10406.9
P10809_1067
3959.5
P10809_1091
4140.7
P10809_1104
4104.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5578.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 4084.6
Samples: 4
Max nTPM: 5776.2
Min nTPM: 2447.5
RHH5310_R3677
5776.2
RHH5218_R3590
3822.2
RHH5247_R3619
4292.4
RHH5276_R3648
2447.5
Naive B-cell nTPM: 4109.5
Samples: 4
Max nTPM: 5471.4
Min nTPM: 2526.3
RHH5308_R3675
5471.4
RHH5216_R3588
4117.1
RHH5245_R3617
2526.3
RHH5274_R3646
4323.3
Non-switched memory B-cell nTPM: 5244.9
Samples: 4
Max nTPM: 6537.9
Min nTPM: 3076.4
RHH5309_R3676
6537.9
RHH5217_R3589
5557.6
RHH5246_R3618
5807.8
RHH5275_R3647
3076.4
Plasmablast nTPM: 5002.6
Samples: 4
Max nTPM: 5860.8
Min nTPM: 3677.3
RHH5312_R3679
5442.3
RHH5220_R3592
5030.0
RHH5249_R3621
5860.8
RHH5278_R3650
3677.3
Switched memory B-cell nTPM: 5578.5
Samples: 4
Max nTPM: 7129.7
Min nTPM: 3548.8
RHH5311_R3678
7129.7
RHH5219_R3591
5729.6
RHH5248_R3620
5905.9
RHH5277_R3649
3548.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
970.6
Schmiedel sample id
TPM
Naive B-cell TPM: 970.6
Samples: 91
Max TPM: 1422.6
Min TPM: 353.2
B_CELL_NAIVE_1
1422.6
B_CELL_NAIVE_2
1372.4
B_CELL_NAIVE_3
1335.8
B_CELL_NAIVE_4
1331.7
B_CELL_NAIVE_5
1300.0
B_CELL_NAIVE_6
1291.1
B_CELL_NAIVE_7
1286.9
B_CELL_NAIVE_8
1267.3
B_CELL_NAIVE_9
1264.1
B_CELL_NAIVE_10
1261.0
B_CELL_NAIVE_11
1260.7
B_CELL_NAIVE_12
1251.5
B_CELL_NAIVE_13
1245.6
B_CELL_NAIVE_14
1242.9
B_CELL_NAIVE_15
1242.2
B_CELL_NAIVE_16
1240.3
B_CELL_NAIVE_17
1232.5
B_CELL_NAIVE_18
1225.0
B_CELL_NAIVE_19
1223.0
B_CELL_NAIVE_20
1209.5
B_CELL_NAIVE_21
1208.8
B_CELL_NAIVE_22
1204.6
B_CELL_NAIVE_23
1185.4
B_CELL_NAIVE_24
1177.2
B_CELL_NAIVE_25
1157.9
B_CELL_NAIVE_26
1148.9
B_CELL_NAIVE_27
1143.7
B_CELL_NAIVE_28
1141.5
B_CELL_NAIVE_29
1120.9
B_CELL_NAIVE_30
1119.8
B_CELL_NAIVE_31
1118.0
B_CELL_NAIVE_32
1115.4
B_CELL_NAIVE_33
1098.2
B_CELL_NAIVE_34
1097.5
B_CELL_NAIVE_35
1096.1
B_CELL_NAIVE_36
1089.6
B_CELL_NAIVE_37
1087.0
B_CELL_NAIVE_38
1079.4
B_CELL_NAIVE_39
1068.2
B_CELL_NAIVE_40
1055.0
B_CELL_NAIVE_41
1041.0
B_CELL_NAIVE_42
1039.5
B_CELL_NAIVE_43
1022.7
B_CELL_NAIVE_44
1017.2
B_CELL_NAIVE_45
1009.7
B_CELL_NAIVE_46
1008.1
B_CELL_NAIVE_47
994.6
B_CELL_NAIVE_48
994.3
B_CELL_NAIVE_49
987.7
B_CELL_NAIVE_50
978.7
B_CELL_NAIVE_51
973.3
B_CELL_NAIVE_52
969.6
B_CELL_NAIVE_53
953.8
B_CELL_NAIVE_54
930.5
B_CELL_NAIVE_55
921.5
B_CELL_NAIVE_56
919.7
B_CELL_NAIVE_57
917.7
B_CELL_NAIVE_58
910.6
B_CELL_NAIVE_59
899.1
B_CELL_NAIVE_60
884.3
B_CELL_NAIVE_61
884.3
B_CELL_NAIVE_62
879.5
B_CELL_NAIVE_63
877.2
B_CELL_NAIVE_64
859.0
B_CELL_NAIVE_65
858.9
B_CELL_NAIVE_66
822.2
B_CELL_NAIVE_67
821.9
B_CELL_NAIVE_68
813.6
B_CELL_NAIVE_69
808.0
B_CELL_NAIVE_70
802.9
B_CELL_NAIVE_71
780.0
B_CELL_NAIVE_72
771.8
B_CELL_NAIVE_73
770.8
B_CELL_NAIVE_74
767.5
B_CELL_NAIVE_75
748.5
B_CELL_NAIVE_76
720.2
B_CELL_NAIVE_77
706.7
B_CELL_NAIVE_78
664.9
B_CELL_NAIVE_79
640.1
B_CELL_NAIVE_80
633.7
B_CELL_NAIVE_81
596.7
B_CELL_NAIVE_82
584.7
B_CELL_NAIVE_83
562.5
B_CELL_NAIVE_84
539.4
B_CELL_NAIVE_85
529.5
B_CELL_NAIVE_86
507.9
B_CELL_NAIVE_87
435.9
B_CELL_NAIVE_88
425.5
B_CELL_NAIVE_89
392.3
B_CELL_NAIVE_90
372.7
B_CELL_NAIVE_91
353.2
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