A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4484.2
nTPM
Monaco:
2352.1
nTPM
Schmiedel:
792.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4484.2
HPA sample
nTPM
NK-cell nTPM: 4484.2
Samples: 6
Max nTPM: 5277.9
Min nTPM: 3359.6
P10809_1013
3359.6
P10809_1033
5272.3
P10809_1052
4207.7
P10809_1071
5277.9
P10809_1093
3920.8
P10809_1103
4866.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2352.1
Monaco sample
nTPM
NK-cell nTPM: 2352.2
Samples: 4
Max nTPM: 2952.4
Min nTPM: 1447.8
RHH5316_R3683
2952.4
RHH5224_R3596
2453.2
RHH5253_R3625
1447.8
RHH5282_R3654
2555.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
792.9
Schmiedel sample id
TPM
NK-cell TPM: 792.9
Samples: 90
Max TPM: 1274.1
Min TPM: 365.0
NK_1
1274.1
NK_2
1209.2
NK_3
1191.4
NK_4
1125.3
NK_5
1108.6
NK_6
1097.6
NK_7
1086.6
NK_8
1076.3
NK_9
1071.2
NK_10
1070.7
NK_11
1066.4
NK_12
1063.1
NK_13
1050.1
NK_14
1045.5
NK_15
1040.0
NK_16
1035.5
NK_17
1026.7
NK_18
1025.5
NK_19
998.1
NK_20
978.5
NK_21
970.4
NK_22
969.8
NK_23
954.1
NK_24
950.3
NK_25
942.9
NK_26
936.9
NK_27
927.4
NK_28
924.9
NK_29
912.5
NK_30
905.3
NK_31
904.7
NK_32
886.4
NK_33
880.9
NK_34
880.3
NK_35
862.6
NK_36
847.0
NK_37
841.6
NK_38
828.3
NK_39
827.0
NK_40
825.6
NK_41
823.0
NK_42
820.6
NK_43
802.6
NK_44
802.4
NK_45
801.0
NK_46
791.2
NK_47
788.3
NK_48
783.7
NK_49
771.7
NK_50
763.5
NK_51
748.1
NK_52
744.2
NK_53
743.6
NK_54
719.8
NK_55
718.8
NK_56
706.3
NK_57
696.1
NK_58
695.2
NK_59
694.4
NK_60
685.7
NK_61
683.0
NK_62
677.9
NK_63
670.3
NK_64
664.6
NK_65
664.4
NK_66
656.5
NK_67
639.6
NK_68
638.0
NK_69
616.1
NK_70
600.0
NK_71
599.1
NK_72
594.4
NK_73
586.1
NK_74
571.5
NK_75
564.9
NK_76
564.2
NK_77
552.7
NK_78
552.5
NK_79
515.1
NK_80
514.8
NK_81
511.1
NK_82
507.5
NK_83
486.2
NK_84
476.0
NK_85
469.0
NK_86
449.6
NK_87
445.4
NK_88
411.5
NK_89
396.7
NK_90
365.0
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