A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1692.6
nTPM
Monaco:
2016.7
nTPM
Schmiedel:
457.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1692.6
HPA sample
nTPM
Classical monocyte nTPM: 1692.6
Samples: 6
Max nTPM: 3211.8
Min nTPM: 1045.0
P10809_1003
3211.8
P10809_1020
1527.5
P10809_1039
1793.9
P10809_1058
1165.0
P10809_1080
1045.0
P10809_1107
1412.4
Intermediate monocyte nTPM: 1482.4
Samples: 6
Max nTPM: 1720.2
Min nTPM: 963.3
P10809_1004
1541.5
P10809_1023
1720.2
P10809_1042
1650.4
P10809_1061
1327.6
P10809_1081
963.3
P10809_1108
1691.4
Non-classical monocyte nTPM: 1346.0
Samples: 5
Max nTPM: 1611.7
Min nTPM: 845.7
P10809_1005
1503.9
P10809_1053
1364.1
P10809_1072
1611.7
P10809_1082
845.7
P10809_1109
1404.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2016.7
Monaco sample
nTPM
Classical monocyte nTPM: 2016.7
Samples: 4
Max nTPM: 2700.3
Min nTPM: 1424.4
RHH5313_R3680
1722.0
RHH5221_R3593
1424.4
RHH5250_R3622
2700.3
RHH5279_R3651
2220.1
Intermediate monocyte nTPM: 1810.3
Samples: 4
Max nTPM: 2481.4
Min nTPM: 968.8
RHH5314_R3681
2231.8
RHH5222_R3594
968.8
RHH5251_R3623
1559.0
RHH5280_R3652
2481.4
Non-classical monocyte nTPM: 1481.4
Samples: 4
Max nTPM: 2054.4
Min nTPM: 780.3
RHH5315_R3682
1652.9
RHH5223_R3595
780.3
RHH5252_R3624
1437.8
RHH5281_R3653
2054.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
457.2
Schmiedel sample id
TPM
Classical monocyte TPM: 457.2
Samples: 91
Max TPM: 627.9
Min TPM: 277.5
MONOCYTES_1
627.9
MONOCYTES_2
627.0
MONOCYTES_3
590.1
MONOCYTES_4
589.9
MONOCYTES_5
570.7
MONOCYTES_6
563.5
MONOCYTES_7
562.5
MONOCYTES_8
555.4
MONOCYTES_9
554.4
MONOCYTES_10
551.1
MONOCYTES_11
551.0
MONOCYTES_12
548.7
MONOCYTES_13
547.5
MONOCYTES_14
545.9
MONOCYTES_15
541.2
MONOCYTES_16
539.4
MONOCYTES_17
535.2
MONOCYTES_18
531.0
MONOCYTES_19
527.3
MONOCYTES_20
524.4
MONOCYTES_21
517.6
MONOCYTES_22
516.4
MONOCYTES_23
512.5
MONOCYTES_24
507.9
MONOCYTES_25
507.6
MONOCYTES_26
504.0
MONOCYTES_27
503.4
MONOCYTES_28
499.0
MONOCYTES_29
498.4
MONOCYTES_30
497.9
MONOCYTES_31
497.4
MONOCYTES_32
497.1
MONOCYTES_33
494.9
MONOCYTES_34
494.7
MONOCYTES_35
494.3
MONOCYTES_36
489.4
MONOCYTES_37
488.9
MONOCYTES_38
486.7
MONOCYTES_39
484.4
MONOCYTES_40
481.4
MONOCYTES_41
479.6
MONOCYTES_42
478.9
MONOCYTES_43
476.1
MONOCYTES_44
471.4
MONOCYTES_45
464.2
MONOCYTES_46
462.9
MONOCYTES_47
461.9
MONOCYTES_48
461.3
MONOCYTES_49
457.9
MONOCYTES_50
455.2
MONOCYTES_51
452.5
MONOCYTES_52
451.2
MONOCYTES_53
450.1
MONOCYTES_54
446.9
MONOCYTES_55
445.5
MONOCYTES_56
444.6
MONOCYTES_57
443.6
MONOCYTES_58
442.5
MONOCYTES_59
440.4
MONOCYTES_60
437.0
MONOCYTES_61
436.7
MONOCYTES_62
434.4
MONOCYTES_63
428.4
MONOCYTES_64
424.4
MONOCYTES_65
418.8
MONOCYTES_66
416.1
MONOCYTES_67
411.4
MONOCYTES_68
408.2
MONOCYTES_69
408.1
MONOCYTES_70
401.1
MONOCYTES_71
397.6
MONOCYTES_72
390.8
MONOCYTES_73
384.9
MONOCYTES_74
379.3
MONOCYTES_75
374.3
MONOCYTES_76
369.6
MONOCYTES_77
360.6
MONOCYTES_78
356.5
MONOCYTES_79
348.4
MONOCYTES_80
346.2
MONOCYTES_81
343.7
MONOCYTES_82
332.1
MONOCYTES_83
319.0
MONOCYTES_84
317.5
MONOCYTES_85
316.1
MONOCYTES_86
315.9
MONOCYTES_87
315.1
MONOCYTES_88
313.7
MONOCYTES_89
295.7
MONOCYTES_90
278.7
MONOCYTES_91
277.5
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Non-classical monocyte TPM: 377.9
Samples: 90
Max TPM: 633.7
Min TPM: 160.3
M2_1
633.7
M2_2
557.8
M2_3
529.8
M2_4
523.7
M2_5
513.8
M2_6
506.4
M2_7
491.7
M2_8
480.5
M2_9
478.3
M2_10
475.0
M2_11
474.7
M2_12
473.1
M2_13
466.5
M2_14
460.6
M2_15
459.6
M2_16
459.4
M2_17
455.9
M2_18
451.3
M2_19
450.9
M2_20
448.4
M2_21
448.3
M2_22
447.9
M2_23
445.2
M2_24
443.6
M2_25
442.6
M2_26
438.5
M2_27
438.0
M2_28
437.7
M2_29
435.5
M2_30
433.4
M2_31
432.3
M2_32
429.6
M2_33
429.6
M2_34
426.9
M2_35
423.6
M2_36
417.2
M2_37
413.6
M2_38
412.0
M2_39
409.4
M2_40
406.1
M2_41
401.7
M2_42
400.5
M2_43
398.4
M2_44
396.8
M2_45
395.0
M2_46
393.2
M2_47
390.0
M2_48
387.6
M2_49
384.7
M2_50
384.5
M2_51
383.7
M2_52
379.3
M2_53
378.7
M2_54
377.2
M2_55
375.0
M2_56
371.8
M2_57
362.0
M2_58
360.9
M2_59
360.0
M2_60
355.2
M2_61
341.9
M2_62
333.4
M2_63
324.3
M2_64
320.9
M2_65
314.2
M2_66
307.2
M2_67
307.2
M2_68
303.1
M2_69
297.5
M2_70
293.8
M2_71
292.9
M2_72
288.7
M2_73
282.7
M2_74
281.1
M2_75
279.1
M2_76
278.8
M2_77
277.4
M2_78
276.8
M2_79
259.2
M2_80
255.0
M2_81
233.2
M2_82
230.3
M2_83
224.4
M2_84
218.2
M2_85
217.6
M2_86
214.3
M2_87
207.0
M2_88
177.0
M2_89
172.3
M2_90
160.3
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