A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.5
nTPM
Monaco:
39.7
nTPM
Schmiedel:
27.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.5
HPA sample
nTPM
Memory B-cell nTPM: 7.9
Samples: 6
Max nTPM: 10.0
Min nTPM: 5.0
P10809_1017
5.0
P10809_1025
10.0
P10809_1044
9.6
P10809_1063
8.5
P10809_1092
6.2
P10809_1105
7.8
Naive B-cell nTPM: 8.5
Samples: 6
Max nTPM: 13.9
Min nTPM: 1.2
P10809_1011
8.7
P10809_1029
10.8
P10809_1048
1.2
P10809_1067
7.5
P10809_1091
9.1
P10809_1104
13.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 31.5
Samples: 4
Max nTPM: 39.2
Min nTPM: 21.6
RHH5310_R3677
21.6
RHH5218_R3590
36.7
RHH5247_R3619
28.6
RHH5276_R3648
39.2
Naive B-cell nTPM: 35.1
Samples: 4
Max nTPM: 42.4
Min nTPM: 32.0
RHH5308_R3675
33.7
RHH5216_R3588
32.0
RHH5245_R3617
42.4
RHH5274_R3646
32.2
Non-switched memory B-cell nTPM: 39.7
Samples: 4
Max nTPM: 58.3
Min nTPM: 27.4
RHH5309_R3676
30.1
RHH5217_R3589
42.8
RHH5246_R3618
27.4
RHH5275_R3647
58.3
Plasmablast nTPM: 3.9
Samples: 4
Max nTPM: 6.4
Min nTPM: 0.3
RHH5312_R3679
0.3
RHH5220_R3592
5.9
RHH5249_R3621
6.4
RHH5278_R3650
2.8
Switched memory B-cell nTPM: 21.0
Samples: 4
Max nTPM: 37.1
Min nTPM: 10.0
RHH5311_R3678
10.0
RHH5219_R3591
37.1
RHH5248_R3620
13.7
RHH5277_R3649
23.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.2
Schmiedel sample id
TPM
Naive B-cell TPM: 27.2
Samples: 91
Max TPM: 51.8
Min TPM: 5.8
B_CELL_NAIVE_1
51.8
B_CELL_NAIVE_2
51.3
B_CELL_NAIVE_3
47.1
B_CELL_NAIVE_4
45.4
B_CELL_NAIVE_5
44.5
B_CELL_NAIVE_6
44.4
B_CELL_NAIVE_7
44.4
B_CELL_NAIVE_8
43.5
B_CELL_NAIVE_9
42.8
B_CELL_NAIVE_10
40.4
B_CELL_NAIVE_11
37.7
B_CELL_NAIVE_12
37.6
B_CELL_NAIVE_13
37.4
B_CELL_NAIVE_14
36.8
B_CELL_NAIVE_15
36.6
B_CELL_NAIVE_16
36.5
B_CELL_NAIVE_17
36.4
B_CELL_NAIVE_18
36.3
B_CELL_NAIVE_19
36.1
B_CELL_NAIVE_20
36.1
B_CELL_NAIVE_21
35.9
B_CELL_NAIVE_22
35.4
B_CELL_NAIVE_23
34.8
B_CELL_NAIVE_24
34.6
B_CELL_NAIVE_25
34.3
B_CELL_NAIVE_26
33.8
B_CELL_NAIVE_27
33.7
B_CELL_NAIVE_28
33.6
B_CELL_NAIVE_29
33.4
B_CELL_NAIVE_30
32.5
B_CELL_NAIVE_31
32.2
B_CELL_NAIVE_32
32.0
B_CELL_NAIVE_33
31.7
B_CELL_NAIVE_34
31.1
B_CELL_NAIVE_35
31.0
B_CELL_NAIVE_36
30.7
B_CELL_NAIVE_37
30.4
B_CELL_NAIVE_38
30.3
B_CELL_NAIVE_39
30.1
B_CELL_NAIVE_40
29.9
B_CELL_NAIVE_41
29.4
B_CELL_NAIVE_42
29.4
B_CELL_NAIVE_43
29.0
B_CELL_NAIVE_44
28.8
B_CELL_NAIVE_45
28.0
B_CELL_NAIVE_46
27.7
B_CELL_NAIVE_47
27.6
B_CELL_NAIVE_48
27.4
B_CELL_NAIVE_49
27.4
B_CELL_NAIVE_50
27.3
B_CELL_NAIVE_51
27.1
B_CELL_NAIVE_52
26.5
B_CELL_NAIVE_53
26.3
B_CELL_NAIVE_54
25.5
B_CELL_NAIVE_55
25.5
B_CELL_NAIVE_56
24.9
B_CELL_NAIVE_57
24.2
B_CELL_NAIVE_58
24.1
B_CELL_NAIVE_59
23.7
B_CELL_NAIVE_60
23.3
B_CELL_NAIVE_61
23.2
B_CELL_NAIVE_62
23.0
B_CELL_NAIVE_63
22.5
B_CELL_NAIVE_64
22.5
B_CELL_NAIVE_65
21.5
B_CELL_NAIVE_66
21.0
B_CELL_NAIVE_67
20.7
B_CELL_NAIVE_68
20.0
B_CELL_NAIVE_69
19.9
B_CELL_NAIVE_70
19.0
B_CELL_NAIVE_71
18.2
B_CELL_NAIVE_72
17.1
B_CELL_NAIVE_73
16.9
B_CELL_NAIVE_74
16.5
B_CELL_NAIVE_75
16.5
B_CELL_NAIVE_76
16.2
B_CELL_NAIVE_77
16.2
B_CELL_NAIVE_78
15.7
B_CELL_NAIVE_79
15.0
B_CELL_NAIVE_80
13.2
B_CELL_NAIVE_81
10.9
B_CELL_NAIVE_82
10.6
B_CELL_NAIVE_83
10.5
B_CELL_NAIVE_84
9.2
B_CELL_NAIVE_85
8.6
B_CELL_NAIVE_86
8.6
B_CELL_NAIVE_87
8.2
B_CELL_NAIVE_88
7.4
B_CELL_NAIVE_89
6.0
B_CELL_NAIVE_90
5.9
B_CELL_NAIVE_91
5.8
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