A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
21.5
nTPM
Monaco:
64.4
nTPM
Schmiedel:
98.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.5
HPA sample
nTPM
NK-cell nTPM: 21.5
Samples: 6
Max nTPM: 29.1
Min nTPM: 0.2
P10809_1013
27.9
P10809_1033
24.9
P10809_1052
29.1
P10809_1071
24.2
P10809_1093
0.2
P10809_1103
22.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.4
Monaco sample
nTPM
NK-cell nTPM: 64.4
Samples: 4
Max nTPM: 86.4
Min nTPM: 51.7
RHH5316_R3683
60.0
RHH5224_R3596
86.4
RHH5253_R3625
51.7
RHH5282_R3654
59.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
98.5
Schmiedel sample id
TPM
NK-cell TPM: 98.5
Samples: 90
Max TPM: 208.3
Min TPM: 21.2
NK_1
208.3
NK_2
184.3
NK_3
179.5
NK_4
178.3
NK_5
176.7
NK_6
164.3
NK_7
162.6
NK_8
162.6
NK_9
162.3
NK_10
155.8
NK_11
154.2
NK_12
153.8
NK_13
147.4
NK_14
147.4
NK_15
140.9
NK_16
140.3
NK_17
140.0
NK_18
138.7
NK_19
136.5
NK_20
136.4
NK_21
135.9
NK_22
130.5
NK_23
130.3
NK_24
126.4
NK_25
122.1
NK_26
121.8
NK_27
119.8
NK_28
118.0
NK_29
115.5
NK_30
114.5
NK_31
113.0
NK_32
110.8
NK_33
110.0
NK_34
109.1
NK_35
108.6
NK_36
102.4
NK_37
102.4
NK_38
101.2
NK_39
100.9
NK_40
100.6
NK_41
99.7
NK_42
99.0
NK_43
97.1
NK_44
96.0
NK_45
91.2
NK_46
90.9
NK_47
90.4
NK_48
89.2
NK_49
89.2
NK_50
86.0
NK_51
85.1
NK_52
83.9
NK_53
83.8
NK_54
83.7
NK_55
81.9
NK_56
81.9
NK_57
81.0
NK_58
80.1
NK_59
79.3
NK_60
77.5
NK_61
74.7
NK_62
73.9
NK_63
73.1
NK_64
73.0
NK_65
71.3
NK_66
70.3
NK_67
69.5
NK_68
69.1
NK_69
67.9
NK_70
66.0
NK_71
65.5
NK_72
64.0
NK_73
63.0
NK_74
62.5
NK_75
58.9
NK_76
56.5
NK_77
52.5
NK_78
51.5
NK_79
48.9
NK_80
47.6
NK_81
47.5
NK_82
45.1
NK_83
45.0
NK_84
44.8
NK_85
39.2
NK_86
36.4
NK_87
34.4
NK_88
30.8
NK_89
28.3
NK_90
21.2
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