A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
51.0
nTPM
Monaco:
166.2
nTPM
Schmiedel:
108.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.0
HPA sample
nTPM
Classical monocyte nTPM: 43.5
Samples: 6
Max nTPM: 56.1
Min nTPM: 33.9
P10809_1003
56.1
P10809_1020
46.0
P10809_1039
39.9
P10809_1058
33.9
P10809_1080
37.0
P10809_1107
48.0
Intermediate monocyte nTPM: 40.4
Samples: 6
Max nTPM: 56.8
Min nTPM: 26.4
P10809_1004
56.8
P10809_1023
37.4
P10809_1042
49.8
P10809_1061
26.4
P10809_1081
29.9
P10809_1108
42.0
Non-classical monocyte nTPM: 51.0
Samples: 5
Max nTPM: 63.6
Min nTPM: 37.1
P10809_1005
63.6
P10809_1053
47.6
P10809_1072
53.4
P10809_1082
37.1
P10809_1109
53.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
166.2
Monaco sample
nTPM
Classical monocyte nTPM: 134.8
Samples: 4
Max nTPM: 152.2
Min nTPM: 103.9
RHH5313_R3680
103.9
RHH5221_R3593
152.2
RHH5250_R3622
131.3
RHH5279_R3651
151.7
Intermediate monocyte nTPM: 166.2
Samples: 4
Max nTPM: 196.3
Min nTPM: 145.8
RHH5314_R3681
145.8
RHH5222_R3594
196.3
RHH5251_R3623
171.5
RHH5280_R3652
151.2
Non-classical monocyte nTPM: 160.4
Samples: 4
Max nTPM: 178.2
Min nTPM: 132.6
RHH5315_R3682
153.4
RHH5223_R3595
177.4
RHH5252_R3624
178.2
RHH5281_R3653
132.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
108.6
Schmiedel sample id
TPM
Classical monocyte TPM: 95.1
Samples: 91
Max TPM: 150.3
Min TPM: 46.2
MONOCYTES_1
150.3
MONOCYTES_2
144.8
MONOCYTES_3
134.7
MONOCYTES_4
133.2
MONOCYTES_5
132.2
MONOCYTES_6
131.9
MONOCYTES_7
131.9
MONOCYTES_8
131.0
MONOCYTES_9
128.4
MONOCYTES_10
126.7
MONOCYTES_11
126.6
MONOCYTES_12
123.5
MONOCYTES_13
122.6
MONOCYTES_14
121.8
MONOCYTES_15
121.8
MONOCYTES_16
120.8
MONOCYTES_17
120.1
MONOCYTES_18
119.1
MONOCYTES_19
117.6
MONOCYTES_20
117.2
MONOCYTES_21
116.6
MONOCYTES_22
116.2
MONOCYTES_23
114.5
MONOCYTES_24
114.3
MONOCYTES_25
114.2
MONOCYTES_26
113.2
MONOCYTES_27
113.0
MONOCYTES_28
111.1
MONOCYTES_29
110.5
MONOCYTES_30
109.3
MONOCYTES_31
108.2
MONOCYTES_32
108.0
MONOCYTES_33
107.9
MONOCYTES_34
107.5
MONOCYTES_35
102.6
MONOCYTES_36
102.5
MONOCYTES_37
102.1
MONOCYTES_38
101.6
MONOCYTES_39
101.5
MONOCYTES_40
99.2
MONOCYTES_41
97.0
MONOCYTES_42
96.3
MONOCYTES_43
94.8
MONOCYTES_44
94.6
MONOCYTES_45
94.3
MONOCYTES_46
93.8
MONOCYTES_47
93.7
MONOCYTES_48
93.3
MONOCYTES_49
93.0
MONOCYTES_50
92.5
MONOCYTES_51
91.4
MONOCYTES_52
90.5
MONOCYTES_53
88.8
MONOCYTES_54
88.1
MONOCYTES_55
87.8
MONOCYTES_56
86.9
MONOCYTES_57
86.5
MONOCYTES_58
85.4
MONOCYTES_59
84.3
MONOCYTES_60
83.6
MONOCYTES_61
82.9
MONOCYTES_62
82.7
MONOCYTES_63
82.7
MONOCYTES_64
82.2
MONOCYTES_65
81.2
MONOCYTES_66
80.6
MONOCYTES_67
78.3
MONOCYTES_68
76.9
MONOCYTES_69
76.1
MONOCYTES_70
75.4
MONOCYTES_71
75.0
MONOCYTES_72
74.5
MONOCYTES_73
74.1
MONOCYTES_74
72.9
MONOCYTES_75
71.7
MONOCYTES_76
71.1
MONOCYTES_77
69.9
MONOCYTES_78
68.7
MONOCYTES_79
65.5
MONOCYTES_80
64.5
MONOCYTES_81
63.2
MONOCYTES_82
59.5
MONOCYTES_83
57.3
MONOCYTES_84
57.3
MONOCYTES_85
56.8
MONOCYTES_86
54.5
MONOCYTES_87
54.2
MONOCYTES_88
52.9
MONOCYTES_89
51.0
MONOCYTES_90
49.4
MONOCYTES_91
46.2
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Non-classical monocyte TPM: 108.6
Samples: 90
Max TPM: 172.6
Min TPM: 32.2
M2_1
172.6
M2_2
169.1
M2_3
167.9
M2_4
161.5
M2_5
159.4
M2_6
159.3
M2_7
159.2
M2_8
158.1
M2_9
156.1
M2_10
155.0
M2_11
154.7
M2_12
152.5
M2_13
151.8
M2_14
146.0
M2_15
144.5
M2_16
143.4
M2_17
143.2
M2_18
143.0
M2_19
141.4
M2_20
141.1
M2_21
140.7
M2_22
140.1
M2_23
139.7
M2_24
139.3
M2_25
138.5
M2_26
132.7
M2_27
132.2
M2_28
132.0
M2_29
131.3
M2_30
131.1
M2_31
130.1
M2_32
129.0
M2_33
128.6
M2_34
127.6
M2_35
126.8
M2_36
126.1
M2_37
126.1
M2_38
123.6
M2_39
123.1
M2_40
119.7
M2_41
118.6
M2_42
117.9
M2_43
117.2
M2_44
116.8
M2_45
116.8
M2_46
114.5
M2_47
113.2
M2_48
110.6
M2_49
110.6
M2_50
109.3
M2_51
107.4
M2_52
104.5
M2_53
98.9
M2_54
98.8
M2_55
97.8
M2_56
97.0
M2_57
96.0
M2_58
95.6
M2_59
92.1
M2_60
91.6
M2_61
89.5
M2_62
89.0
M2_63
88.3
M2_64
86.6
M2_65
84.9
M2_66
83.3
M2_67
82.6
M2_68
81.4
M2_69
80.5
M2_70
74.1
M2_71
71.4
M2_72
71.0
M2_73
67.9
M2_74
67.5
M2_75
66.5
M2_76
63.5
M2_77
62.4
M2_78
61.0
M2_79
60.7
M2_80
57.6
M2_81
56.1
M2_82
54.5
M2_83
52.8
M2_84
51.5
M2_85
48.1
M2_86
46.9
M2_87
44.9
M2_88
43.0
M2_89
33.5
M2_90
32.2
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