MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:82.4 nTPM
HPA Brain:54.7 nTPM
GTEx:82.4 nTPM
FANTOM5:82.2 Scaled Tags Per Million
Pig:87.3 nTPM
Mouse:246.1 nTPM
Allen mouse:7.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 54.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.0
2411 Female, age 72, unknown 48.2
1870 Female, age 42, unknown 46.9
1827 Male, age 72, unknown 44.3
2019 Male, age 18, unknown 41.6
1833 Male, age 53, unknown 39.9
2828 Female, age 72, unknown 39.5
1830 Male, age 51, unknown 38.8
2219 Male, age 76, both hemispheres 34.3
2586 Male, age 75, left hemisphere 33.7
2666 Male, age 74, left hemisphere 32.8
Dorsal raphe nucleus
nTPM: 48.7
2298 Female, age 72, unknown 58.9
2047 Male, age 72, unknown 51.7
2750 Male, age 76, both hemispheres 47.0
1828 Male, age 53, unknown 45.8
2016 Female, age 72, unknown 39.9
Inferior colliculus
nTPM: 42.7
2097 Female, age 72, unknown 48.2
1848 Female, age 42, unknown 43.0
1890 Male, age 53, unknown 42.5
2849 Male, age 72, unknown 37.1
Median raphe nucleus
nTPM: 51.6
2220 Male, age 76, midline 51.6
Periaquaductal grey, anterior
nTPM: 44.2
1947 Male, age 18, unknown 47.5
2502 Female, age 75, unknown 45.3
1795 Male, age 51, unknown 39.8
Periaquaductal grey, dorsal
nTPM: 41.4
2850 Male, age 76, both hemispheres 46.3
1840 Male, age 53, unknown 43.2
1831 Male, age 72, unknown 40.0
2464 Female, age 72, unknown 36.1
Periaquaductal grey, lateral
nTPM: 41.9
2053 Male, age 18, unknown 44.0
2272 Male, age 74, both hemispheres 41.4
2140 Male, age 76, both hemispheres 40.4
Pretectal area
nTPM: 48.2
1817 Female, age 42, unknown 55.5
1944 Female, age 72, unknown 54.8
2224 Female, age 72, unknown 53.1
1816 Male, age 51, unknown 52.6
2007 Male, age 72, unknown 52.1
2667 Female, age 75, unknown 48.6
1815 Male, age 53, unknown 47.9
2273 Male, age 74, both hemispheres 44.3
2316 Male, age 76, right hemisphere 42.5
2825 Male, age 18, unknown 41.3
2407 Male, age 75, both hemispheres 37.2
Red nucleus
nTPM: 39.4
1821 Female, age 72, unknown 51.0
2725 Female, age 75, unknown 49.4
1954 Female, age 42, unknown 45.1
1865 Male, age 51, unknown 41.6
2503 Female, age 72, unknown 40.6
2823 Male, age 76, right hemisphere 40.1
1904 Male, age 53, unknown 38.8
2227 Male, age 72, unknown 37.8
2785 Male, age 18, unknown 37.3
2769 Male, age 72, unknown 34.3
2588 Male, age 74, left hemisphere 28.9
2584 Male, age 75, left hemisphere 27.9
Substantia nigra
nTPM: 54.7
2241 Male, age 72, unknown 70.6
2409 Female, age 72, unknown 68.4
1916 Female, age 42, unknown 68.3
1851 Male, age 51, unknown 62.8
1889 Female, age 72, unknown 56.9
2699 Male, age 18, unknown 49.7
1941 Male, age 53, unknown 48.3
2665 Male, age 74, both hemispheres 43.1
2590 Female, age 75, unknown 42.2
2583 Male, age 75, right hemisphere 37.1
Superior colliculus
nTPM: 41.6
2587 Male, age 74, left hemisphere 49.1
2261 Male, age 18, unknown 45.2
1895 Male, age 76, right hemisphere 45.1
1796 Male, age 53, unknown 44.3
2087 Female, age 72, unknown 43.8
1913 Female, age 42, unknown 40.9
1839 Male, age 51, unknown 39.5
2668 Female, age 75, unknown 39.3
2664 Male, age 75, both hemispheres 35.4
1995 Male, age 72, unknown 32.8
Ventral tegmental area
nTPM: 49.2
2410 Female, age 72, unknown 56.4
1915 Female, age 42, unknown 54.4
2021 Male, age 53, unknown 50.5
2218 Male, age 76, both hemispheres 47.5
2223 Female, age 72, unknown 44.5
1942 Male, age 51, unknown 41.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 82.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 82.4
Samples: 183

Max nTPM: 224.4
Min nTPM: 50.9
Std nTPM: 22.4
Median nTPM: 76.9
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 224.4
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 193.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 164.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 149.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 138.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 135.5
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 132.8
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 132.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 127.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 126.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 123.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 82.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 82.2
FF:10158-103A5 76 years, female 82.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 87.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 84.3
Samples: 4

Max nTPM: 117.6
Min nTPM: 58.6
Sample A Female 117.6
Sample B Female 78.4
Sample C Male 82.7
Sample D Male 58.6
Midbrain
nTPM: 85.2
Samples: 4

Max nTPM: 94.7
Min nTPM: 71.4
Sample A Female 93.1
Sample B Female 81.4
Sample C Male 94.7
Sample D Male 71.4
Periaqueductal gray
nTPM: 64.8
Samples: 3

Max nTPM: 71.3
Min nTPM: 59.4
Sample B Female 63.7
Sample C Male 71.3
Sample D Male 59.4
Superior colliculi
nTPM: 87.3
Samples: 4

Max nTPM: 96.5
Min nTPM: 78.1
Sample A Female 96.2
Sample B Female 78.4
Sample C Male 96.5
Sample D Male 78.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 246.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 246.1
Samples: 4

Max nTPM: 251.1
Min nTPM: 238.7
Sample A Male 248.0
Sample B Male 238.7
Sample C Female 246.7
Sample D Female 251.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.7
69817408 Antisense, RP_050510_03_C12, Mouse strain C57BL/6J (56 days, male) 7.7

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo