A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
28.9
nTPM
Monaco:
125.5
nTPM
Schmiedel:
58.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.9
HPA sample
nTPM
Memory B-cell nTPM: 23.6
Samples: 6
Max nTPM: 38.1
Min nTPM: 14.8
P10809_1017
16.6
P10809_1025
22.5
P10809_1044
14.8
P10809_1063
28.8
P10809_1092
21.0
P10809_1105
38.1
Naive B-cell nTPM: 28.9
Samples: 6
Max nTPM: 65.8
Min nTPM: 10.6
P10809_1011
10.6
P10809_1029
33.7
P10809_1048
65.8
P10809_1067
20.3
P10809_1091
21.9
P10809_1104
21.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
125.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 111.0
Samples: 4
Max nTPM: 158.3
Min nTPM: 70.7
RHH5310_R3677
70.7
RHH5218_R3590
101.8
RHH5247_R3619
158.3
RHH5276_R3648
113.1
Naive B-cell nTPM: 109.5
Samples: 4
Max nTPM: 155.9
Min nTPM: 88.2
RHH5308_R3675
88.2
RHH5216_R3588
101.9
RHH5245_R3617
155.9
RHH5274_R3646
91.8
Non-switched memory B-cell nTPM: 125.5
Samples: 4
Max nTPM: 153.4
Min nTPM: 73.2
RHH5309_R3676
73.2
RHH5217_R3589
135.8
RHH5246_R3618
153.4
RHH5275_R3647
139.5
Plasmablast nTPM: 66.2
Samples: 4
Max nTPM: 86.7
Min nTPM: 53.8
RHH5312_R3679
65.2
RHH5220_R3592
59.2
RHH5249_R3621
53.8
RHH5278_R3650
86.7
Switched memory B-cell nTPM: 113.1
Samples: 4
Max nTPM: 138.0
Min nTPM: 94.0
RHH5311_R3678
94.0
RHH5219_R3591
111.7
RHH5248_R3620
138.0
RHH5277_R3649
108.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.4
Schmiedel sample id
TPM
Naive B-cell TPM: 58.4
Samples: 91
Max TPM: 84.4
Min TPM: 34.4
B_CELL_NAIVE_1
84.4
B_CELL_NAIVE_2
83.6
B_CELL_NAIVE_3
78.3
B_CELL_NAIVE_4
77.3
B_CELL_NAIVE_5
75.2
B_CELL_NAIVE_6
74.7
B_CELL_NAIVE_7
74.1
B_CELL_NAIVE_8
73.9
B_CELL_NAIVE_9
73.4
B_CELL_NAIVE_10
68.3
B_CELL_NAIVE_11
66.9
B_CELL_NAIVE_12
65.7
B_CELL_NAIVE_13
65.7
B_CELL_NAIVE_14
65.6
B_CELL_NAIVE_15
65.4
B_CELL_NAIVE_16
65.3
B_CELL_NAIVE_17
65.2
B_CELL_NAIVE_18
64.4
B_CELL_NAIVE_19
64.4
B_CELL_NAIVE_20
64.3
B_CELL_NAIVE_21
63.4
B_CELL_NAIVE_22
63.4
B_CELL_NAIVE_23
63.0
B_CELL_NAIVE_24
62.7
B_CELL_NAIVE_25
62.6
B_CELL_NAIVE_26
62.5
B_CELL_NAIVE_27
62.5
B_CELL_NAIVE_28
62.2
B_CELL_NAIVE_29
62.1
B_CELL_NAIVE_30
62.0
B_CELL_NAIVE_31
61.7
B_CELL_NAIVE_32
61.7
B_CELL_NAIVE_33
61.5
B_CELL_NAIVE_34
61.4
B_CELL_NAIVE_35
61.3
B_CELL_NAIVE_36
60.7
B_CELL_NAIVE_37
60.7
B_CELL_NAIVE_38
60.6
B_CELL_NAIVE_39
60.5
B_CELL_NAIVE_40
60.4
B_CELL_NAIVE_41
59.7
B_CELL_NAIVE_42
59.2
B_CELL_NAIVE_43
59.2
B_CELL_NAIVE_44
59.2
B_CELL_NAIVE_45
59.0
B_CELL_NAIVE_46
58.7
B_CELL_NAIVE_47
58.4
B_CELL_NAIVE_48
58.3
B_CELL_NAIVE_49
58.2
B_CELL_NAIVE_50
57.7
B_CELL_NAIVE_51
57.2
B_CELL_NAIVE_52
57.2
B_CELL_NAIVE_53
57.0
B_CELL_NAIVE_54
56.8
B_CELL_NAIVE_55
56.5
B_CELL_NAIVE_56
56.2
B_CELL_NAIVE_57
55.8
B_CELL_NAIVE_58
55.6
B_CELL_NAIVE_59
55.0
B_CELL_NAIVE_60
54.7
B_CELL_NAIVE_61
53.8
B_CELL_NAIVE_62
53.8
B_CELL_NAIVE_63
53.5
B_CELL_NAIVE_64
53.2
B_CELL_NAIVE_65
53.2
B_CELL_NAIVE_66
53.1
B_CELL_NAIVE_67
53.0
B_CELL_NAIVE_68
52.2
B_CELL_NAIVE_69
52.1
B_CELL_NAIVE_70
51.7
B_CELL_NAIVE_71
51.7
B_CELL_NAIVE_72
51.0
B_CELL_NAIVE_73
50.1
B_CELL_NAIVE_74
49.8
B_CELL_NAIVE_75
49.7
B_CELL_NAIVE_76
49.4
B_CELL_NAIVE_77
49.4
B_CELL_NAIVE_78
49.3
B_CELL_NAIVE_79
49.3
B_CELL_NAIVE_80
48.8
B_CELL_NAIVE_81
48.6
B_CELL_NAIVE_82
48.3
B_CELL_NAIVE_83
47.1
B_CELL_NAIVE_84
46.3
B_CELL_NAIVE_85
45.9
B_CELL_NAIVE_86
45.8
B_CELL_NAIVE_87
45.1
B_CELL_NAIVE_88
44.9
B_CELL_NAIVE_89
41.0
B_CELL_NAIVE_90
37.0
B_CELL_NAIVE_91
34.4
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