A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
17.3
nTPM
Monaco:
84.0
nTPM
Schmiedel:
42.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.3
HPA sample
nTPM
Classical monocyte nTPM: 16.2
Samples: 6
Max nTPM: 24.2
Min nTPM: 11.9
P10809_1003
16.5
P10809_1020
15.0
P10809_1039
24.2
P10809_1058
11.9
P10809_1080
15.2
P10809_1107
14.1
Intermediate monocyte nTPM: 13.9
Samples: 6
Max nTPM: 16.3
Min nTPM: 9.7
P10809_1004
14.1
P10809_1023
15.4
P10809_1042
16.3
P10809_1061
9.7
P10809_1081
14.8
P10809_1108
13.2
Non-classical monocyte nTPM: 17.3
Samples: 5
Max nTPM: 22.4
Min nTPM: 12.0
P10809_1005
12.0
P10809_1053
19.1
P10809_1072
22.4
P10809_1082
16.8
P10809_1109
16.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
84.0
Monaco sample
nTPM
Classical monocyte nTPM: 84.0
Samples: 4
Max nTPM: 113.6
Min nTPM: 68.7
RHH5313_R3680
77.1
RHH5221_R3593
76.5
RHH5250_R3622
113.6
RHH5279_R3651
68.7
Intermediate monocyte nTPM: 68.7
Samples: 4
Max nTPM: 77.6
Min nTPM: 59.0
RHH5314_R3681
67.1
RHH5222_R3594
71.2
RHH5251_R3623
59.0
RHH5280_R3652
77.6
Non-classical monocyte nTPM: 82.0
Samples: 4
Max nTPM: 108.0
Min nTPM: 58.2
RHH5315_R3682
58.2
RHH5223_R3595
108.0
RHH5252_R3624
87.9
RHH5281_R3653
73.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.4
Schmiedel sample id
TPM
Classical monocyte TPM: 32.7
Samples: 91
Max TPM: 42.5
Min TPM: 23.5
MONOCYTES_1
42.5
MONOCYTES_2
40.6
MONOCYTES_3
40.4
MONOCYTES_4
40.1
MONOCYTES_5
39.9
MONOCYTES_6
39.7
MONOCYTES_7
39.7
MONOCYTES_8
39.1
MONOCYTES_9
38.3
MONOCYTES_10
38.0
MONOCYTES_11
37.9
MONOCYTES_12
37.8
MONOCYTES_13
37.7
MONOCYTES_14
37.6
MONOCYTES_15
37.6
MONOCYTES_16
37.0
MONOCYTES_17
36.7
MONOCYTES_18
36.6
MONOCYTES_19
36.4
MONOCYTES_20
36.3
MONOCYTES_21
36.3
MONOCYTES_22
35.7
MONOCYTES_23
35.7
MONOCYTES_24
35.6
MONOCYTES_25
35.5
MONOCYTES_26
35.4
MONOCYTES_27
35.4
MONOCYTES_28
35.2
MONOCYTES_29
35.0
MONOCYTES_30
34.9
MONOCYTES_31
34.5
MONOCYTES_32
34.5
MONOCYTES_33
34.4
MONOCYTES_34
34.4
MONOCYTES_35
34.3
MONOCYTES_36
34.2
MONOCYTES_37
34.2
MONOCYTES_38
34.0
MONOCYTES_39
34.0
MONOCYTES_40
33.8
MONOCYTES_41
33.4
MONOCYTES_42
33.0
MONOCYTES_43
32.1
MONOCYTES_44
31.9
MONOCYTES_45
31.8
MONOCYTES_46
31.8
MONOCYTES_47
31.8
MONOCYTES_48
31.7
MONOCYTES_49
31.5
MONOCYTES_50
31.5
MONOCYTES_51
31.5
MONOCYTES_52
31.4
MONOCYTES_53
31.4
MONOCYTES_54
31.4
MONOCYTES_55
31.2
MONOCYTES_56
31.1
MONOCYTES_57
31.0
MONOCYTES_58
31.0
MONOCYTES_59
30.9
MONOCYTES_60
30.6
MONOCYTES_61
30.6
MONOCYTES_62
30.6
MONOCYTES_63
30.4
MONOCYTES_64
30.3
MONOCYTES_65
30.2
MONOCYTES_66
30.1
MONOCYTES_67
29.9
MONOCYTES_68
29.8
MONOCYTES_69
29.7
MONOCYTES_70
29.6
MONOCYTES_71
29.5
MONOCYTES_72
29.4
MONOCYTES_73
29.2
MONOCYTES_74
29.2
MONOCYTES_75
29.1
MONOCYTES_76
29.1
MONOCYTES_77
29.1
MONOCYTES_78
28.8
MONOCYTES_79
28.8
MONOCYTES_80
28.1
MONOCYTES_81
28.0
MONOCYTES_82
27.5
MONOCYTES_83
27.5
MONOCYTES_84
27.2
MONOCYTES_85
26.4
MONOCYTES_86
26.2
MONOCYTES_87
26.0
MONOCYTES_88
25.8
MONOCYTES_89
25.7
MONOCYTES_90
25.5
MONOCYTES_91
23.5
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Non-classical monocyte TPM: 42.4
Samples: 90
Max TPM: 55.6
Min TPM: 27.2
M2_1
55.6
M2_2
55.6
M2_3
55.5
M2_4
55.0
M2_5
54.0
M2_6
53.8
M2_7
52.9
M2_8
52.4
M2_9
52.3
M2_10
50.9
M2_11
50.7
M2_12
50.1
M2_13
49.5
M2_14
48.9
M2_15
48.9
M2_16
48.8
M2_17
48.4
M2_18
47.9
M2_19
47.9
M2_20
47.5
M2_21
47.2
M2_22
47.1
M2_23
47.1
M2_24
46.9
M2_25
46.8
M2_26
46.8
M2_27
45.4
M2_28
45.2
M2_29
44.8
M2_30
44.6
M2_31
44.6
M2_32
44.4
M2_33
44.2
M2_34
43.8
M2_35
43.6
M2_36
43.6
M2_37
43.5
M2_38
43.3
M2_39
43.2
M2_40
43.2
M2_41
43.0
M2_42
43.0
M2_43
43.0
M2_44
42.9
M2_45
42.5
M2_46
42.5
M2_47
42.3
M2_48
42.0
M2_49
41.7
M2_50
41.3
M2_51
41.2
M2_52
41.1
M2_53
41.0
M2_54
40.9
M2_55
40.4
M2_56
40.4
M2_57
39.9
M2_58
39.8
M2_59
39.6
M2_60
39.1
M2_61
39.1
M2_62
39.0
M2_63
38.7
M2_64
38.5
M2_65
38.4
M2_66
38.1
M2_67
38.1
M2_68
38.0
M2_69
37.9
M2_70
37.7
M2_71
37.3
M2_72
36.6
M2_73
36.5
M2_74
36.3
M2_75
36.0
M2_76
35.9
M2_77
35.9
M2_78
35.1
M2_79
34.9
M2_80
34.4
M2_81
34.1
M2_82
34.0
M2_83
34.0
M2_84
33.8
M2_85
33.8
M2_86
32.3
M2_87
31.7
M2_88
31.5
M2_89
28.7
M2_90
27.2
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