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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
110.3
Sample id
Sample description
nTPM
Amygdala nTPM: 48.0
2517
Female, age 94, left hemisphere
79.0
1987
Female, age 91, left hemisphere
57.8
2695
Female, age 67, right hemisphere
51.1
2514
Male, age 75, right hemisphere
27.7
2814
Male, age 76, right hemisphere
24.4
Basal amygdala nTPM: 110.3
2685
Female, age 94, left hemisphere
137.4
2243
Female, age 91, right hemisphere
130.0
2110
Male, age 80, left hemisphere
118.4
2827
Female, age 67, right hemisphere
111.4
1955
Male, age 76, both hemispheres
86.7
2609
Male, age 75, right hemisphere
77.9
Central amygdala nTPM: 83.0
2701
Female, age 91, right hemisphere
114.4
2826
Female, age 94, left hemisphere
104.0
2239
Male, age 80, left hemisphere
99.5
2515
Male, age 75, right hemisphere
76.2
1905
Male, age 76, both hemispheres
21.1
Corticomedial amygdala nTPM: 98.6
2535
Female, age 67, right hemisphere
127.1
2429
Female, age 94, left hemisphere
124.2
2240
Male, age 76, both hemispheres
113.6
2829
Male, age 80, left hemisphere
108.8
2428
Male, age 75, right hemisphere
70.3
2242
Female, age 91, right hemisphere
47.7
Lateral amygdala nTPM: 72.6
2534
Female, age 94, left hemisphere
119.1
2255
Female, age 91, right hemisphere
86.1
2256
Male, age 80, left hemisphere
61.6
2516
Male, age 75, right hemisphere
60.5
2830
Female, age 67, right hemisphere
56.3
1883
Male, age 76, both hemispheres
52.1
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
126.2
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 126.2
Samples: 181
Max nTPM: 338.9
Min nTPM: 16.4
Std nTPM: 56.6
Median nTPM: 122.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
338.9
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
309.4
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
309.2
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
282.0
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
254.5
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
253.4
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
251.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
247.6
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
241.5
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
228.4
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
218.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
217.5
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
215.4
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
215.4
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
205.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
200.9
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
198.5
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
196.9
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
195.4
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
194.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
193.4
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
191.2
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
190.4
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
186.4
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
184.9
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
184.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
182.6
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
182.0
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
179.7
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
179.2
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
178.2
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
177.3
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
174.9
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
172.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
171.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
171.1
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
167.4
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
166.9
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
165.5
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
164.5
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
161.6
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
161.6
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
158.6
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
154.7
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
154.6
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
153.1
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
152.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
151.9
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
150.7
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
150.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
146.8
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
146.7
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
145.2
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
145.1
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
145.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
144.8
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
143.4
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
143.0
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
142.4
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
142.3
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
141.9
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
140.4
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
139.0
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
138.9
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
138.7
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
138.6
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
136.4
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
136.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
136.2
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
134.4
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
133.8
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
133.1
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
132.7
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
132.4
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
131.8
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
131.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
131.2
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
131.1
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
131.0
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
129.5
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
129.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
129.4
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
129.3
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
128.9
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
126.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
126.2
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
124.8
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
124.7
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
123.8
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
122.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
122.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
121.3
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
119.4
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
118.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
117.1
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
116.4
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
114.6
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
113.9
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
113.8
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
112.9
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
112.8
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
112.3
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
112.2
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
111.8
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
111.5
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
109.7
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
109.5
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
107.5
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
106.1
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
105.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
105.1
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
103.4
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
101.1
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
101.0
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
100.7
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
99.6
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
97.2
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
97.0
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
94.7
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
94.5
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
94.2
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
93.8
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
93.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
93.0
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
93.0
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
92.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
92.4
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
92.2
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
92.0
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
90.3
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
89.3
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
88.7
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
88.6
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
86.6
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
86.1
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
85.6
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
85.0
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
84.1
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
83.3
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
82.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
81.8
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
81.5
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
80.2
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
80.1
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
80.1
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
79.7
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
79.0
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
79.0
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
78.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
76.2
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
75.6
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
75.1
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
74.2
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
73.6
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
72.6
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
72.4
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
70.5
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
67.2
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
66.8
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
66.5
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
65.2
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
62.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
60.8
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
60.3
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
59.1
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
55.7
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
55.5
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
55.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
53.2
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
50.7
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
49.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
44.2
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
41.5
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
40.8
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
40.5
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
40.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
37.5
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
37.1
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
33.6
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
33.2
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
16.4
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
84.4
Mouse sample
Sample description
nTPM
Amygdala nTPM: 84.4
Samples: 4
Max nTPM: 92.2
Min nTPM: 74.7
Sample A
Male
92.2
Sample B
Male
84.3
Sample C
Female
74.7
Sample D
Female
86.3
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
