MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:103.7 nTPM
HPA Brain:118.5 nTPM
GTEx:103.7 nTPM
FANTOM5:93.8 Scaled Tags Per Million
Pig:31.3 nTPM
Mouse:35.7 nTPM
Allen mouse:3.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 118.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 97.7
2019 Male, age 18, unknown 142.4
2586 Male, age 75, left hemisphere 130.4
2666 Male, age 74, left hemisphere 123.8
2828 Female, age 72, unknown 100.4
1870 Female, age 42, unknown 89.2
1830 Male, age 51, unknown 88.6
1833 Male, age 53, unknown 80.1
2411 Female, age 72, unknown 76.6
1827 Male, age 72, unknown 76.1
2219 Male, age 76, both hemispheres 69.3
Dorsal raphe nucleus
nTPM: 102.7
2047 Male, age 72, unknown 115.9
1828 Male, age 53, unknown 113.0
2298 Female, age 72, unknown 98.5
2016 Female, age 72, unknown 93.6
2750 Male, age 76, both hemispheres 92.3
Inferior colliculus
nTPM: 86.1
2097 Female, age 72, unknown 88.8
1890 Male, age 53, unknown 88.2
2849 Male, age 72, unknown 85.8
1848 Female, age 42, unknown 81.5
Median raphe nucleus
nTPM: 118.5
2220 Male, age 76, midline 118.5
Periaquaductal grey, anterior
nTPM: 84.0
1795 Male, age 51, unknown 92.2
1947 Male, age 18, unknown 82.4
2502 Female, age 75, unknown 77.4
Periaquaductal grey, dorsal
nTPM: 93.4
2850 Male, age 76, both hemispheres 104.7
1840 Male, age 53, unknown 94.4
2464 Female, age 72, unknown 88.7
1831 Male, age 72, unknown 85.8
Periaquaductal grey, lateral
nTPM: 86.4
2140 Male, age 76, both hemispheres 100.7
2272 Male, age 74, both hemispheres 86.5
2053 Male, age 18, unknown 71.9
Pretectal area
nTPM: 91.9
1817 Female, age 42, unknown 136.7
2007 Male, age 72, unknown 128.1
1944 Female, age 72, unknown 101.8
1815 Male, age 53, unknown 99.6
2273 Male, age 74, both hemispheres 88.5
2224 Female, age 72, unknown 83.3
1816 Male, age 51, unknown 80.8
2316 Male, age 76, right hemisphere 76.5
2825 Male, age 18, unknown 76.0
2407 Male, age 75, both hemispheres 70.5
2667 Female, age 75, unknown 68.7
Red nucleus
nTPM: 91.4
2785 Male, age 18, unknown 117.1
2584 Male, age 75, left hemisphere 111.9
2725 Female, age 75, unknown 106.1
2503 Female, age 72, unknown 99.1
2588 Male, age 74, left hemisphere 89.6
2769 Male, age 72, unknown 88.2
1865 Male, age 51, unknown 87.6
2227 Male, age 72, unknown 87.0
2823 Male, age 76, right hemisphere 79.7
1821 Female, age 72, unknown 79.5
1954 Female, age 42, unknown 78.4
1904 Male, age 53, unknown 72.6
Substantia nigra
nTPM: 112.4
2590 Female, age 75, unknown 123.4
2665 Male, age 74, both hemispheres 120.6
2583 Male, age 75, right hemisphere 120.5
1916 Female, age 42, unknown 119.9
1941 Male, age 53, unknown 115.9
1851 Male, age 51, unknown 115.5
2409 Female, age 72, unknown 111.1
2699 Male, age 18, unknown 106.4
1889 Female, age 72, unknown 100.0
2241 Male, age 72, unknown 90.2
Superior colliculus
nTPM: 82.6
1839 Male, age 51, unknown 95.4
2587 Male, age 74, left hemisphere 93.5
1995 Male, age 72, unknown 90.4
2668 Female, age 75, unknown 89.3
1913 Female, age 42, unknown 84.0
2664 Male, age 75, both hemispheres 82.4
2087 Female, age 72, unknown 80.1
1796 Male, age 53, unknown 79.5
1895 Male, age 76, right hemisphere 67.8
2261 Male, age 18, unknown 63.1
Ventral tegmental area
nTPM: 94.8
2021 Male, age 53, unknown 108.4
1915 Female, age 42, unknown 104.7
2410 Female, age 72, unknown 99.3
1942 Male, age 51, unknown 87.4
2218 Male, age 76, both hemispheres 84.6
2223 Female, age 72, unknown 84.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 103.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 103.7
Samples: 183

Max nTPM: 234.2
Min nTPM: 31.9
Std nTPM: 35.9
Median nTPM: 98.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 234.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 229.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 215.0
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 209.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 200.3
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 193.6
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 192.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 182.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 181.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 181.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 171.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 93.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.8
FF:10158-103A5 76 years, female 93.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 31.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.3
Samples: 4

Max nTPM: 39.1
Min nTPM: 23.6
Sample A Female 39.1
Sample B Female 30.4
Sample C Male 32.2
Sample D Male 23.6
Midbrain
nTPM: 25.2
Samples: 4

Max nTPM: 38.3
Min nTPM: 17.0
Sample A Female 38.3
Sample B Female 26.8
Sample C Male 17.0
Sample D Male 18.7
Periaqueductal gray
nTPM: 26.5
Samples: 3

Max nTPM: 29.6
Min nTPM: 23.5
Sample B Female 26.5
Sample C Male 29.6
Sample D Male 23.5
Superior colliculi
nTPM: 23.8
Samples: 4

Max nTPM: 31.4
Min nTPM: 18.4
Sample A Female 31.4
Sample B Female 18.4
Sample C Male 21.0
Sample D Male 24.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 35.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.7
Samples: 4

Max nTPM: 41.2
Min nTPM: 31.8
Sample A Male 41.2
Sample B Male 31.8
Sample C Female 32.3
Sample D Female 37.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
72472769 Antisense, RP_051101_02_D01, Mouse strain C57BL/6J (56 days, male) 4.7
69568974 Antisense, RP_050426_03_B12, Mouse strain C57BL/6J (56 days, male) 2.4

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo