MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:70.7 nTPM
HPA Brain:60.8 nTPM
GTEx:70.7 nTPM
FANTOM5:105.8 Scaled Tags Per Million
Pig:82.8 nTPM
Mouse:108.7 nTPM
Allen mouse:6.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 60.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.0
2019 Male, age 18, unknown 78.8
2411 Female, age 72, unknown 60.6
1870 Female, age 42, unknown 57.8
1827 Male, age 72, unknown 56.3
2666 Male, age 74, left hemisphere 54.2
1830 Male, age 51, unknown 52.2
1833 Male, age 53, unknown 50.8
2828 Female, age 72, unknown 50.6
2586 Male, age 75, left hemisphere 50.1
2219 Male, age 76, both hemispheres 49.0
Dorsal raphe nucleus
nTPM: 45.7
1828 Male, age 53, unknown 54.5
2047 Male, age 72, unknown 48.0
2750 Male, age 76, both hemispheres 47.0
2298 Female, age 72, unknown 41.4
2016 Female, age 72, unknown 37.5
Inferior colliculus
nTPM: 47.6
1890 Male, age 53, unknown 49.1
2097 Female, age 72, unknown 47.8
1848 Female, age 42, unknown 47.2
2849 Male, age 72, unknown 46.2
Median raphe nucleus
nTPM: 42.2
2220 Male, age 76, midline 42.2
Periaquaductal grey, anterior
nTPM: 44.4
1947 Male, age 18, unknown 46.1
1795 Male, age 51, unknown 45.2
2502 Female, age 75, unknown 42.0
Periaquaductal grey, dorsal
nTPM: 37.5
1831 Male, age 72, unknown 39.5
2464 Female, age 72, unknown 39.1
2850 Male, age 76, both hemispheres 38.2
1840 Male, age 53, unknown 33.2
Periaquaductal grey, lateral
nTPM: 38.1
2272 Male, age 74, both hemispheres 42.8
2053 Male, age 18, unknown 37.3
2140 Male, age 76, both hemispheres 34.2
Pretectal area
nTPM: 53.7
2007 Male, age 72, unknown 75.4
1817 Female, age 42, unknown 66.2
1944 Female, age 72, unknown 63.3
1816 Male, age 51, unknown 59.4
1815 Male, age 53, unknown 57.3
2407 Male, age 75, both hemispheres 57.1
2667 Female, age 75, unknown 55.1
2825 Male, age 18, unknown 42.7
2273 Male, age 74, both hemispheres 42.1
2224 Female, age 72, unknown 36.3
2316 Male, age 76, right hemisphere 35.6
Red nucleus
nTPM: 60.8
1821 Female, age 72, unknown 72.5
2588 Male, age 74, left hemisphere 68.0
2785 Male, age 18, unknown 67.3
1865 Male, age 51, unknown 63.5
1954 Female, age 42, unknown 62.0
1904 Male, age 53, unknown 58.8
2823 Male, age 76, right hemisphere 58.8
2769 Male, age 72, unknown 58.2
2584 Male, age 75, left hemisphere 56.6
2503 Female, age 72, unknown 55.6
2227 Male, age 72, unknown 55.1
2725 Female, age 75, unknown 52.5
Substantia nigra
nTPM: 56.0
1941 Male, age 53, unknown 70.4
1916 Female, age 42, unknown 66.9
1889 Female, age 72, unknown 64.8
2583 Male, age 75, right hemisphere 60.2
1851 Male, age 51, unknown 59.3
2409 Female, age 72, unknown 52.6
2590 Female, age 75, unknown 49.1
2241 Male, age 72, unknown 45.9
2665 Male, age 74, both hemispheres 45.9
2699 Male, age 18, unknown 45.2
Superior colliculus
nTPM: 49.2
2668 Female, age 75, unknown 63.5
2587 Male, age 74, left hemisphere 55.5
2087 Female, age 72, unknown 50.5
1895 Male, age 76, right hemisphere 50.1
1913 Female, age 42, unknown 48.4
1796 Male, age 53, unknown 46.7
1839 Male, age 51, unknown 45.8
2261 Male, age 18, unknown 45.3
2664 Male, age 75, both hemispheres 44.3
1995 Male, age 72, unknown 42.2
Ventral tegmental area
nTPM: 50.3
2410 Female, age 72, unknown 65.4
2223 Female, age 72, unknown 52.5
2218 Male, age 76, both hemispheres 51.8
1915 Female, age 42, unknown 51.0
1942 Male, age 51, unknown 43.2
2021 Male, age 53, unknown 37.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 70.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.7
Samples: 183

Max nTPM: 213.7
Min nTPM: 34.0
Std nTPM: 24.0
Median nTPM: 64.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 213.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 156.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 138.2
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 134.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 128.4
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 118.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 113.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 112.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 111.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 110.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 110.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 105.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 105.8
FF:10158-103A5 76 years, female 105.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 82.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 66.7
Samples: 4

Max nTPM: 80.3
Min nTPM: 53.9
Sample A Female 80.3
Sample B Female 53.9
Sample C Male 63.7
Sample D Male 68.9
Midbrain
nTPM: 78.1
Samples: 4

Max nTPM: 90.6
Min nTPM: 71.0
Sample A Female 90.6
Sample B Female 71.0
Sample C Male 79.8
Sample D Male 71.1
Periaqueductal gray
nTPM: 57.8
Samples: 3

Max nTPM: 62.3
Min nTPM: 53.6
Sample B Female 62.3
Sample C Male 57.4
Sample D Male 53.6
Superior colliculi
nTPM: 82.8
Samples: 4

Max nTPM: 88.9
Min nTPM: 72.5
Sample A Female 87.9
Sample B Female 72.5
Sample C Male 88.9
Sample D Male 81.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 108.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 108.7
Samples: 4

Max nTPM: 113.5
Min nTPM: 104.6
Sample A Male 106.6
Sample B Male 110.0
Sample C Female 113.5
Sample D Female 104.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.1
75774681 Antisense, RP_060530_01_D06, Mouse strain C57BL/6J (56 days, male) 9.1
67978724 Antisense, RP_040923_01_G02, Mouse strain C57BL/6J (56 days, male) 3.1

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