A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
22.6
nTPM
Monaco:
118.1
nTPM
Schmiedel:
173.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.6
HPA sample
nTPM
Memory B-cell nTPM: 22.6
Samples: 6
Max nTPM: 26.8
Min nTPM: 13.6
P10809_1017
25.6
P10809_1025
26.3
P10809_1044
13.6
P10809_1063
21.2
P10809_1092
26.8
P10809_1105
21.8
Naive B-cell nTPM: 22.0
Samples: 6
Max nTPM: 29.4
Min nTPM: 11.1
P10809_1011
28.2
P10809_1029
23.0
P10809_1048
11.1
P10809_1067
14.3
P10809_1091
29.4
P10809_1104
26.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
118.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 101.1
Samples: 4
Max nTPM: 118.6
Min nTPM: 73.9
RHH5310_R3677
73.9
RHH5218_R3590
107.9
RHH5247_R3619
118.6
RHH5276_R3648
104.1
Naive B-cell nTPM: 118.1
Samples: 4
Max nTPM: 174.7
Min nTPM: 88.1
RHH5308_R3675
106.4
RHH5216_R3588
88.1
RHH5245_R3617
174.7
RHH5274_R3646
103.0
Non-switched memory B-cell nTPM: 101.4
Samples: 4
Max nTPM: 122.7
Min nTPM: 76.3
RHH5309_R3676
84.7
RHH5217_R3589
76.3
RHH5246_R3618
122.7
RHH5275_R3647
122.0
Plasmablast nTPM: 73.5
Samples: 4
Max nTPM: 108.7
Min nTPM: 53.1
RHH5312_R3679
57.2
RHH5220_R3592
53.1
RHH5249_R3621
108.7
RHH5278_R3650
75.0
Switched memory B-cell nTPM: 74.9
Samples: 4
Max nTPM: 90.7
Min nTPM: 42.9
RHH5311_R3678
42.9
RHH5219_R3591
86.1
RHH5248_R3620
79.7
RHH5277_R3649
90.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
173.7
Schmiedel sample id
TPM
Naive B-cell TPM: 173.7
Samples: 91
Max TPM: 278.2
Min TPM: 93.6
B_CELL_NAIVE_1
278.2
B_CELL_NAIVE_2
264.0
B_CELL_NAIVE_3
263.2
B_CELL_NAIVE_4
263.0
B_CELL_NAIVE_5
255.2
B_CELL_NAIVE_6
244.0
B_CELL_NAIVE_7
239.5
B_CELL_NAIVE_8
237.9
B_CELL_NAIVE_9
237.9
B_CELL_NAIVE_10
237.7
B_CELL_NAIVE_11
225.3
B_CELL_NAIVE_12
225.0
B_CELL_NAIVE_13
222.2
B_CELL_NAIVE_14
220.8
B_CELL_NAIVE_15
220.8
B_CELL_NAIVE_16
220.7
B_CELL_NAIVE_17
219.1
B_CELL_NAIVE_18
217.4
B_CELL_NAIVE_19
216.3
B_CELL_NAIVE_20
214.6
B_CELL_NAIVE_21
214.0
B_CELL_NAIVE_22
212.1
B_CELL_NAIVE_23
211.8
B_CELL_NAIVE_24
210.6
B_CELL_NAIVE_25
210.3
B_CELL_NAIVE_26
206.5
B_CELL_NAIVE_27
205.9
B_CELL_NAIVE_28
199.2
B_CELL_NAIVE_29
199.0
B_CELL_NAIVE_30
197.8
B_CELL_NAIVE_31
197.7
B_CELL_NAIVE_32
197.6
B_CELL_NAIVE_33
194.3
B_CELL_NAIVE_34
192.2
B_CELL_NAIVE_35
190.3
B_CELL_NAIVE_36
190.0
B_CELL_NAIVE_37
189.7
B_CELL_NAIVE_38
185.7
B_CELL_NAIVE_39
184.8
B_CELL_NAIVE_40
183.5
B_CELL_NAIVE_41
179.7
B_CELL_NAIVE_42
178.6
B_CELL_NAIVE_43
176.4
B_CELL_NAIVE_44
174.8
B_CELL_NAIVE_45
174.6
B_CELL_NAIVE_46
173.4
B_CELL_NAIVE_47
171.9
B_CELL_NAIVE_48
171.7
B_CELL_NAIVE_49
169.2
B_CELL_NAIVE_50
166.0
B_CELL_NAIVE_51
165.3
B_CELL_NAIVE_52
163.7
B_CELL_NAIVE_53
163.3
B_CELL_NAIVE_54
162.3
B_CELL_NAIVE_55
161.6
B_CELL_NAIVE_56
160.0
B_CELL_NAIVE_57
157.6
B_CELL_NAIVE_58
156.1
B_CELL_NAIVE_59
155.5
B_CELL_NAIVE_60
154.7
B_CELL_NAIVE_61
154.1
B_CELL_NAIVE_62
154.0
B_CELL_NAIVE_63
153.3
B_CELL_NAIVE_64
153.2
B_CELL_NAIVE_65
151.0
B_CELL_NAIVE_66
150.8
B_CELL_NAIVE_67
147.3
B_CELL_NAIVE_68
144.6
B_CELL_NAIVE_69
132.5
B_CELL_NAIVE_70
127.7
B_CELL_NAIVE_71
124.1
B_CELL_NAIVE_72
122.8
B_CELL_NAIVE_73
121.5
B_CELL_NAIVE_74
121.4
B_CELL_NAIVE_75
117.5
B_CELL_NAIVE_76
117.3
B_CELL_NAIVE_77
115.3
B_CELL_NAIVE_78
115.2
B_CELL_NAIVE_79
113.4
B_CELL_NAIVE_80
112.2
B_CELL_NAIVE_81
107.8
B_CELL_NAIVE_82
107.8
B_CELL_NAIVE_83
107.5
B_CELL_NAIVE_84
107.0
B_CELL_NAIVE_85
106.9
B_CELL_NAIVE_86
106.9
B_CELL_NAIVE_87
101.8
B_CELL_NAIVE_88
97.5
B_CELL_NAIVE_89
96.6
B_CELL_NAIVE_90
96.1
B_CELL_NAIVE_91
93.6
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.