A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
74.7
nTPM
Monaco:
270.3
nTPM
Schmiedel:
363.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.7
HPA sample
nTPM
NK-cell nTPM: 74.7
Samples: 6
Max nTPM: 91.9
Min nTPM: 59.1
P10809_1013
91.9
P10809_1033
75.7
P10809_1052
62.7
P10809_1071
72.9
P10809_1093
59.1
P10809_1103
85.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
270.3
Monaco sample
nTPM
NK-cell nTPM: 270.3
Samples: 4
Max nTPM: 346.7
Min nTPM: 213.1
RHH5316_R3683
251.4
RHH5224_R3596
213.1
RHH5253_R3625
346.7
RHH5282_R3654
269.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
363.6
Schmiedel sample id
TPM
NK-cell TPM: 363.6
Samples: 90
Max TPM: 658.8
Min TPM: 191.5
NK_1
658.8
NK_2
628.2
NK_3
612.8
NK_4
582.2
NK_5
557.8
NK_6
532.4
NK_7
526.6
NK_8
515.0
NK_9
507.3
NK_10
499.0
NK_11
493.7
NK_12
478.6
NK_13
478.5
NK_14
473.4
NK_15
470.5
NK_16
458.5
NK_17
447.6
NK_18
447.3
NK_19
431.0
NK_20
430.5
NK_21
424.8
NK_22
415.0
NK_23
414.6
NK_24
407.6
NK_25
399.3
NK_26
398.6
NK_27
391.5
NK_28
391.1
NK_29
390.4
NK_30
390.4
NK_31
389.0
NK_32
387.5
NK_33
384.6
NK_34
383.8
NK_35
383.7
NK_36
382.6
NK_37
378.9
NK_38
377.6
NK_39
376.3
NK_40
370.7
NK_41
368.5
NK_42
367.1
NK_43
366.7
NK_44
366.5
NK_45
366.3
NK_46
365.0
NK_47
359.2
NK_48
358.2
NK_49
354.6
NK_50
352.9
NK_51
352.2
NK_52
344.4
NK_53
338.7
NK_54
338.2
NK_55
335.2
NK_56
333.0
NK_57
330.1
NK_58
328.7
NK_59
324.6
NK_60
323.8
NK_61
317.3
NK_62
307.4
NK_63
306.6
NK_64
302.8
NK_65
300.7
NK_66
281.6
NK_67
281.1
NK_68
280.1
NK_69
277.3
NK_70
275.9
NK_71
275.5
NK_72
264.8
NK_73
263.0
NK_74
262.0
NK_75
260.6
NK_76
258.1
NK_77
249.8
NK_78
241.8
NK_79
241.2
NK_80
236.0
NK_81
234.7
NK_82
234.3
NK_83
230.5
NK_84
227.3
NK_85
225.2
NK_86
222.9
NK_87
216.6
NK_88
213.9
NK_89
202.6
NK_90
191.5
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