A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.1
nTPM
Monaco:
65.4
nTPM
Schmiedel:
16.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.1
HPA sample
nTPM
Memory B-cell nTPM: 8.2
Samples: 6
Max nTPM: 13.8
Min nTPM: 3.7
P10809_1017
13.0
P10809_1025
7.0
P10809_1044
13.8
P10809_1063
3.7
P10809_1092
5.0
P10809_1105
6.4
Naive B-cell nTPM: 5.9
Samples: 6
Max nTPM: 10.9
Min nTPM: 0.0
P10809_1011
10.9
P10809_1029
6.3
P10809_1048
0.0
P10809_1067
3.9
P10809_1091
5.9
P10809_1104
8.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
65.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 63.9
Samples: 4
Max nTPM: 78.8
Min nTPM: 43.2
RHH5310_R3677
63.3
RHH5218_R3590
70.2
RHH5247_R3619
78.8
RHH5276_R3648
43.2
Naive B-cell nTPM: 65.4
Samples: 4
Max nTPM: 96.1
Min nTPM: 41.6
RHH5308_R3675
41.6
RHH5216_R3588
80.6
RHH5245_R3617
96.1
RHH5274_R3646
43.3
Non-switched memory B-cell nTPM: 49.6
Samples: 4
Max nTPM: 57.8
Min nTPM: 39.7
RHH5309_R3676
43.7
RHH5217_R3589
57.0
RHH5246_R3618
39.7
RHH5275_R3647
57.8
Plasmablast nTPM: 59.3
Samples: 4
Max nTPM: 70.8
Min nTPM: 51.0
RHH5312_R3679
51.0
RHH5220_R3592
60.4
RHH5249_R3621
54.9
RHH5278_R3650
70.8
Switched memory B-cell nTPM: 59.0
Samples: 4
Max nTPM: 75.7
Min nTPM: 47.0
RHH5311_R3678
47.0
RHH5219_R3591
55.6
RHH5248_R3620
75.7
RHH5277_R3649
57.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.9
Schmiedel sample id
TPM
Naive B-cell TPM: 16.9
Samples: 91
Max TPM: 28.6
Min TPM: 4.5
B_CELL_NAIVE_1
28.6
B_CELL_NAIVE_2
25.3
B_CELL_NAIVE_3
25.0
B_CELL_NAIVE_4
24.5
B_CELL_NAIVE_5
24.4
B_CELL_NAIVE_6
24.4
B_CELL_NAIVE_7
24.2
B_CELL_NAIVE_8
24.2
B_CELL_NAIVE_9
23.9
B_CELL_NAIVE_10
23.9
B_CELL_NAIVE_11
23.3
B_CELL_NAIVE_12
23.0
B_CELL_NAIVE_13
22.7
B_CELL_NAIVE_14
22.5
B_CELL_NAIVE_15
22.2
B_CELL_NAIVE_16
22.2
B_CELL_NAIVE_17
22.2
B_CELL_NAIVE_18
22.2
B_CELL_NAIVE_19
21.7
B_CELL_NAIVE_20
21.7
B_CELL_NAIVE_21
21.4
B_CELL_NAIVE_22
21.3
B_CELL_NAIVE_23
21.3
B_CELL_NAIVE_24
21.2
B_CELL_NAIVE_25
21.0
B_CELL_NAIVE_26
20.8
B_CELL_NAIVE_27
20.5
B_CELL_NAIVE_28
19.6
B_CELL_NAIVE_29
19.4
B_CELL_NAIVE_30
19.4
B_CELL_NAIVE_31
19.1
B_CELL_NAIVE_32
19.0
B_CELL_NAIVE_33
18.9
B_CELL_NAIVE_34
18.8
B_CELL_NAIVE_35
18.8
B_CELL_NAIVE_36
18.7
B_CELL_NAIVE_37
18.7
B_CELL_NAIVE_38
18.7
B_CELL_NAIVE_39
18.7
B_CELL_NAIVE_40
18.7
B_CELL_NAIVE_41
18.5
B_CELL_NAIVE_42
18.5
B_CELL_NAIVE_43
18.4
B_CELL_NAIVE_44
18.2
B_CELL_NAIVE_45
18.2
B_CELL_NAIVE_46
18.1
B_CELL_NAIVE_47
17.8
B_CELL_NAIVE_48
17.7
B_CELL_NAIVE_49
17.3
B_CELL_NAIVE_50
17.3
B_CELL_NAIVE_51
17.2
B_CELL_NAIVE_52
17.1
B_CELL_NAIVE_53
16.8
B_CELL_NAIVE_54
16.3
B_CELL_NAIVE_55
16.1
B_CELL_NAIVE_56
15.9
B_CELL_NAIVE_57
15.9
B_CELL_NAIVE_58
15.5
B_CELL_NAIVE_59
15.3
B_CELL_NAIVE_60
15.1
B_CELL_NAIVE_61
14.8
B_CELL_NAIVE_62
14.8
B_CELL_NAIVE_63
14.8
B_CELL_NAIVE_64
14.5
B_CELL_NAIVE_65
14.5
B_CELL_NAIVE_66
14.3
B_CELL_NAIVE_67
14.3
B_CELL_NAIVE_68
14.2
B_CELL_NAIVE_69
14.1
B_CELL_NAIVE_70
13.7
B_CELL_NAIVE_71
13.6
B_CELL_NAIVE_72
12.9
B_CELL_NAIVE_73
11.8
B_CELL_NAIVE_74
11.6
B_CELL_NAIVE_75
11.5
B_CELL_NAIVE_76
11.4
B_CELL_NAIVE_77
11.2
B_CELL_NAIVE_78
10.7
B_CELL_NAIVE_79
10.2
B_CELL_NAIVE_80
10.1
B_CELL_NAIVE_81
9.5
B_CELL_NAIVE_82
8.8
B_CELL_NAIVE_83
7.4
B_CELL_NAIVE_84
7.0
B_CELL_NAIVE_85
7.0
B_CELL_NAIVE_86
6.8
B_CELL_NAIVE_87
5.7
B_CELL_NAIVE_88
5.4
B_CELL_NAIVE_89
5.1
B_CELL_NAIVE_90
4.9
B_CELL_NAIVE_91
4.5
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
