A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
17.2
nTPM
Monaco:
92.9
nTPM
Schmiedel:
33.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.2
HPA sample
nTPM
Classical monocyte nTPM: 13.6
Samples: 6
Max nTPM: 28.9
Min nTPM: 4.8
P10809_1003
28.9
P10809_1020
10.7
P10809_1039
4.8
P10809_1058
12.0
P10809_1080
11.4
P10809_1107
13.8
Intermediate monocyte nTPM: 14.1
Samples: 6
Max nTPM: 25.6
Min nTPM: 5.8
P10809_1004
25.6
P10809_1023
5.8
P10809_1042
9.0
P10809_1061
22.0
P10809_1081
9.3
P10809_1108
12.9
Non-classical monocyte nTPM: 17.2
Samples: 5
Max nTPM: 30.7
Min nTPM: 5.6
P10809_1005
27.9
P10809_1053
11.2
P10809_1072
30.7
P10809_1082
5.6
P10809_1109
10.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
92.9
Monaco sample
nTPM
Classical monocyte nTPM: 87.0
Samples: 4
Max nTPM: 105.4
Min nTPM: 69.0
RHH5313_R3680
81.5
RHH5221_R3593
105.4
RHH5250_R3622
92.0
RHH5279_R3651
69.0
Intermediate monocyte nTPM: 86.7
Samples: 4
Max nTPM: 121.7
Min nTPM: 73.2
RHH5314_R3681
73.2
RHH5222_R3594
121.7
RHH5251_R3623
75.3
RHH5280_R3652
76.4
Non-classical monocyte nTPM: 92.9
Samples: 4
Max nTPM: 107.0
Min nTPM: 71.7
RHH5315_R3682
96.8
RHH5223_R3595
107.0
RHH5252_R3624
71.7
RHH5281_R3653
96.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.0
Schmiedel sample id
TPM
Classical monocyte TPM: 33.0
Samples: 91
Max TPM: 50.8
Min TPM: 17.6
MONOCYTES_1
50.8
MONOCYTES_2
48.8
MONOCYTES_3
46.1
MONOCYTES_4
46.0
MONOCYTES_5
45.9
MONOCYTES_6
45.0
MONOCYTES_7
43.5
MONOCYTES_8
43.4
MONOCYTES_9
43.0
MONOCYTES_10
43.0
MONOCYTES_11
42.9
MONOCYTES_12
41.5
MONOCYTES_13
41.4
MONOCYTES_14
41.1
MONOCYTES_15
41.1
MONOCYTES_16
40.3
MONOCYTES_17
40.2
MONOCYTES_18
39.9
MONOCYTES_19
39.7
MONOCYTES_20
39.5
MONOCYTES_21
39.4
MONOCYTES_22
39.2
MONOCYTES_23
39.0
MONOCYTES_24
38.7
MONOCYTES_25
38.7
MONOCYTES_26
37.6
MONOCYTES_27
37.6
MONOCYTES_28
37.6
MONOCYTES_29
37.3
MONOCYTES_30
36.5
MONOCYTES_31
35.8
MONOCYTES_32
35.7
MONOCYTES_33
35.5
MONOCYTES_34
35.4
MONOCYTES_35
35.3
MONOCYTES_36
35.2
MONOCYTES_37
35.2
MONOCYTES_38
35.1
MONOCYTES_39
34.3
MONOCYTES_40
34.3
MONOCYTES_41
34.0
MONOCYTES_42
33.9
MONOCYTES_43
33.8
MONOCYTES_44
33.8
MONOCYTES_45
33.6
MONOCYTES_46
33.1
MONOCYTES_47
33.0
MONOCYTES_48
32.9
MONOCYTES_49
32.7
MONOCYTES_50
32.6
MONOCYTES_51
32.4
MONOCYTES_52
31.9
MONOCYTES_53
31.4
MONOCYTES_54
31.3
MONOCYTES_55
31.1
MONOCYTES_56
30.9
MONOCYTES_57
30.9
MONOCYTES_58
30.4
MONOCYTES_59
30.3
MONOCYTES_60
29.5
MONOCYTES_61
29.0
MONOCYTES_62
28.8
MONOCYTES_63
28.8
MONOCYTES_64
28.3
MONOCYTES_65
28.2
MONOCYTES_66
28.2
MONOCYTES_67
28.2
MONOCYTES_68
28.1
MONOCYTES_69
27.9
MONOCYTES_70
26.7
MONOCYTES_71
26.5
MONOCYTES_72
26.3
MONOCYTES_73
26.0
MONOCYTES_74
25.9
MONOCYTES_75
25.5
MONOCYTES_76
25.2
MONOCYTES_77
24.9
MONOCYTES_78
24.8
MONOCYTES_79
24.4
MONOCYTES_80
23.9
MONOCYTES_81
23.6
MONOCYTES_82
23.5
MONOCYTES_83
22.8
MONOCYTES_84
22.5
MONOCYTES_85
22.1
MONOCYTES_86
21.7
MONOCYTES_87
20.9
MONOCYTES_88
19.0
MONOCYTES_89
19.0
MONOCYTES_90
19.0
MONOCYTES_91
17.6
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Non-classical monocyte TPM: 24.4
Samples: 90
Max TPM: 38.7
Min TPM: 7.6
M2_1
38.7
M2_2
38.0
M2_3
37.5
M2_4
37.4
M2_5
36.7
M2_6
36.1
M2_7
34.9
M2_8
34.8
M2_9
34.3
M2_10
34.1
M2_11
34.0
M2_12
33.1
M2_13
32.8
M2_14
32.3
M2_15
32.2
M2_16
32.0
M2_17
31.3
M2_18
30.8
M2_19
30.8
M2_20
30.5
M2_21
30.5
M2_22
30.5
M2_23
30.5
M2_24
30.2
M2_25
30.1
M2_26
29.7
M2_27
29.3
M2_28
28.5
M2_29
27.9
M2_30
27.8
M2_31
27.8
M2_32
27.7
M2_33
27.3
M2_34
27.2
M2_35
27.1
M2_36
26.7
M2_37
26.6
M2_38
26.5
M2_39
26.3
M2_40
26.3
M2_41
26.2
M2_42
26.1
M2_43
26.0
M2_44
26.0
M2_45
25.9
M2_46
25.6
M2_47
25.5
M2_48
25.4
M2_49
25.3
M2_50
25.3
M2_51
25.1
M2_52
24.4
M2_53
24.2
M2_54
23.9
M2_55
23.4
M2_56
22.2
M2_57
21.9
M2_58
21.7
M2_59
20.5
M2_60
20.1
M2_61
19.8
M2_62
19.4
M2_63
19.3
M2_64
18.9
M2_65
18.8
M2_66
18.6
M2_67
18.2
M2_68
18.0
M2_69
17.9
M2_70
17.5
M2_71
17.4
M2_72
17.2
M2_73
16.2
M2_74
15.5
M2_75
15.5
M2_76
15.5
M2_77
15.0
M2_78
14.7
M2_79
14.1
M2_80
14.1
M2_81
13.9
M2_82
13.8
M2_83
13.8
M2_84
13.3
M2_85
12.9
M2_86
12.5
M2_87
12.2
M2_88
10.2
M2_89
8.3
M2_90
7.6
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