A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.1
nTPM
Monaco:
108.6
nTPM
Schmiedel:
38.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.1
HPA sample
nTPM
NK-cell nTPM: 11.1
Samples: 6
Max nTPM: 22.6
Min nTPM: 0.0
P10809_1013
15.3
P10809_1033
9.1
P10809_1052
22.6
P10809_1071
9.0
P10809_1093
0.0
P10809_1103
10.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
108.6
Monaco sample
nTPM
NK-cell nTPM: 108.7
Samples: 4
Max nTPM: 131.6
Min nTPM: 84.6
RHH5316_R3683
99.8
RHH5224_R3596
131.6
RHH5253_R3625
118.6
RHH5282_R3654
84.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.9
Schmiedel sample id
TPM
NK-cell TPM: 38.9
Samples: 90
Max TPM: 77.2
Min TPM: 12.8
NK_1
77.2
NK_2
69.3
NK_3
66.8
NK_4
65.7
NK_5
62.6
NK_6
61.5
NK_7
61.0
NK_8
61.0
NK_9
61.0
NK_10
59.8
NK_11
59.0
NK_12
58.1
NK_13
58.0
NK_14
56.4
NK_15
56.2
NK_16
56.1
NK_17
53.2
NK_18
52.8
NK_19
51.9
NK_20
50.6
NK_21
50.6
NK_22
50.4
NK_23
50.3
NK_24
49.4
NK_25
48.8
NK_26
48.0
NK_27
46.4
NK_28
46.3
NK_29
45.4
NK_30
44.2
NK_31
44.0
NK_32
43.6
NK_33
43.5
NK_34
43.0
NK_35
42.8
NK_36
42.1
NK_37
41.9
NK_38
41.8
NK_39
41.0
NK_40
41.0
NK_41
39.8
NK_42
39.6
NK_43
38.6
NK_44
38.0
NK_45
37.9
NK_46
37.6
NK_47
36.8
NK_48
36.2
NK_49
35.9
NK_50
34.8
NK_51
34.3
NK_52
33.8
NK_53
33.8
NK_54
33.3
NK_55
32.4
NK_56
32.3
NK_57
32.3
NK_58
31.8
NK_59
31.7
NK_60
31.2
NK_61
30.7
NK_62
30.7
NK_63
28.8
NK_64
28.7
NK_65
28.6
NK_66
28.5
NK_67
27.8
NK_68
27.3
NK_69
27.2
NK_70
27.2
NK_71
26.8
NK_72
26.6
NK_73
26.0
NK_74
25.1
NK_75
24.6
NK_76
24.4
NK_77
22.0
NK_78
21.0
NK_79
21.0
NK_80
20.9
NK_81
18.9
NK_82
18.6
NK_83
18.6
NK_84
18.6
NK_85
18.5
NK_86
17.7
NK_87
17.0
NK_88
14.1
NK_89
13.2
NK_90
12.8
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