MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:104.1 nTPM
HPA Brain:120.7 nTPM
GTEx:104.1 nTPM
FANTOM5:127.3 Scaled Tags Per Million
Pig:110.2 nTPM
Mouse:141.2 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 120.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.0
2411 Female, age 72, unknown 109.6
2019 Male, age 18, unknown 107.1
2219 Male, age 76, both hemispheres 98.7
1827 Male, age 72, unknown 96.5
1870 Female, age 42, unknown 87.4
1833 Male, age 53, unknown 86.1
1830 Male, age 51, unknown 75.6
2828 Female, age 72, unknown 75.5
2666 Male, age 74, left hemisphere 58.1
2586 Male, age 75, left hemisphere 55.7
Dorsal raphe nucleus
nTPM: 107.6
2298 Female, age 72, unknown 138.8
2750 Male, age 76, both hemispheres 108.7
1828 Male, age 53, unknown 107.0
2047 Male, age 72, unknown 102.5
2016 Female, age 72, unknown 80.8
Inferior colliculus
nTPM: 92.9
2097 Female, age 72, unknown 124.5
1848 Female, age 42, unknown 85.3
1890 Male, age 53, unknown 85.0
2849 Male, age 72, unknown 77.0
Median raphe nucleus
nTPM: 120.7
2220 Male, age 76, midline 120.7
Periaquaductal grey, anterior
nTPM: 106.9
2502 Female, age 75, unknown 115.6
1795 Male, age 51, unknown 106.9
1947 Male, age 18, unknown 98.2
Periaquaductal grey, dorsal
nTPM: 88.4
2850 Male, age 76, both hemispheres 99.0
1840 Male, age 53, unknown 87.2
1831 Male, age 72, unknown 86.5
2464 Female, age 72, unknown 81.1
Periaquaductal grey, lateral
nTPM: 98.2
2272 Male, age 74, both hemispheres 125.6
2053 Male, age 18, unknown 85.3
2140 Male, age 76, both hemispheres 83.8
Pretectal area
nTPM: 109.8
1944 Female, age 72, unknown 131.4
2273 Male, age 74, both hemispheres 128.6
2007 Male, age 72, unknown 127.1
1816 Male, age 51, unknown 126.2
1817 Female, age 42, unknown 126.0
2224 Female, age 72, unknown 124.3
1815 Male, age 53, unknown 110.8
2667 Female, age 75, unknown 100.7
2825 Male, age 18, unknown 84.5
2316 Male, age 76, right hemisphere 74.8
2407 Male, age 75, both hemispheres 73.3
Red nucleus
nTPM: 84.7
1821 Female, age 72, unknown 114.0
2725 Female, age 75, unknown 100.6
2785 Male, age 18, unknown 98.3
2503 Female, age 72, unknown 90.9
1954 Female, age 42, unknown 84.8
2823 Male, age 76, right hemisphere 81.6
1865 Male, age 51, unknown 81.3
2227 Male, age 72, unknown 79.6
1904 Male, age 53, unknown 77.9
2769 Male, age 72, unknown 76.3
2588 Male, age 74, left hemisphere 69.5
2584 Male, age 75, left hemisphere 61.5
Substantia nigra
nTPM: 107.4
1916 Female, age 42, unknown 139.4
2241 Male, age 72, unknown 133.9
1941 Male, age 53, unknown 125.9
1851 Male, age 51, unknown 121.4
1889 Female, age 72, unknown 117.0
2665 Male, age 74, both hemispheres 98.6
2699 Male, age 18, unknown 93.5
2409 Female, age 72, unknown 93.1
2590 Female, age 75, unknown 83.3
2583 Male, age 75, right hemisphere 68.4
Superior colliculus
nTPM: 89.8
2087 Female, age 72, unknown 110.0
2587 Male, age 74, left hemisphere 108.4
2261 Male, age 18, unknown 102.2
1796 Male, age 53, unknown 95.9
1895 Male, age 76, right hemisphere 93.8
2668 Female, age 75, unknown 91.2
1839 Male, age 51, unknown 84.6
1913 Female, age 42, unknown 81.3
1995 Male, age 72, unknown 72.5
2664 Male, age 75, both hemispheres 58.0
Ventral tegmental area
nTPM: 107.3
2218 Male, age 76, both hemispheres 132.3
2410 Female, age 72, unknown 125.8
1915 Female, age 42, unknown 112.5
2223 Female, age 72, unknown 93.4
1942 Male, age 51, unknown 91.8
2021 Male, age 53, unknown 87.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 104.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 104.1
Samples: 183

Max nTPM: 248.1
Min nTPM: 59.5
Std nTPM: 31.9
Median nTPM: 97.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 248.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 234.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 206.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 204.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 202.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 197.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 180.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 176.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 174.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 168.2
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 159.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 127.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 127.3
FF:10158-103A5 76 years, female 127.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 110.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 106.4
Samples: 4

Max nTPM: 131.3
Min nTPM: 74.7
Sample A Female 131.3
Sample B Female 104.8
Sample C Male 114.8
Sample D Male 74.7
Midbrain
nTPM: 106.1
Samples: 4

Max nTPM: 122.0
Min nTPM: 89.7
Sample A Female 122.0
Sample B Female 101.2
Sample C Male 111.5
Sample D Male 89.7
Periaqueductal gray
nTPM: 91.2
Samples: 3

Max nTPM: 110.5
Min nTPM: 79.0
Sample B Female 84.0
Sample C Male 110.5
Sample D Male 79.0
Superior colliculi
nTPM: 110.2
Samples: 4

Max nTPM: 125.1
Min nTPM: 89.2
Sample A Female 121.2
Sample B Female 105.2
Sample C Male 125.1
Sample D Male 89.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 141.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 141.3
Samples: 4

Max nTPM: 146.3
Min nTPM: 138.3
Sample A Male 138.3
Sample B Male 146.3
Sample C Female 138.7
Sample D Female 141.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71724017 Antisense, RP_050921_01_D03, Mouse strain C57BL/6J (56 days, male) 0.1

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