A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
56.8
nTPM
Monaco:
133.0
nTPM
Schmiedel:
10.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
56.8
HPA sample
nTPM
Memory B-cell nTPM: 56.8
Samples: 6
Max nTPM: 121.7
Min nTPM: 34.8
P10809_1017
34.8
P10809_1025
45.5
P10809_1044
121.7
P10809_1063
57.7
P10809_1092
39.3
P10809_1105
41.5
Naive B-cell nTPM: 42.3
Samples: 6
Max nTPM: 85.5
Min nTPM: 23.1
P10809_1011
23.1
P10809_1029
39.5
P10809_1048
85.5
P10809_1067
24.4
P10809_1091
39.4
P10809_1104
41.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
133.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 45.7
Samples: 4
Max nTPM: 72.8
Min nTPM: 27.2
RHH5310_R3677
72.8
RHH5218_R3590
45.2
RHH5247_R3619
27.2
RHH5276_R3648
37.6
Naive B-cell nTPM: 42.2
Samples: 4
Max nTPM: 55.2
Min nTPM: 22.4
RHH5308_R3675
55.2
RHH5216_R3588
41.8
RHH5245_R3617
22.4
RHH5274_R3646
49.3
Non-switched memory B-cell nTPM: 46.0
Samples: 4
Max nTPM: 57.9
Min nTPM: 25.4
RHH5309_R3676
57.9
RHH5217_R3589
50.3
RHH5246_R3618
50.4
RHH5275_R3647
25.4
Plasmablast nTPM: 133.0
Samples: 4
Max nTPM: 150.8
Min nTPM: 105.5
RHH5312_R3679
142.7
RHH5220_R3592
150.8
RHH5249_R3621
132.9
RHH5278_R3650
105.5
Switched memory B-cell nTPM: 61.8
Samples: 4
Max nTPM: 80.4
Min nTPM: 48.9
RHH5311_R3678
80.4
RHH5219_R3591
48.9
RHH5248_R3620
64.6
RHH5277_R3649
53.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.9
Schmiedel sample id
TPM
Naive B-cell TPM: 10.9
Samples: 91
Max TPM: 17.8
Min TPM: 2.2
B_CELL_NAIVE_1
17.8
B_CELL_NAIVE_2
17.3
B_CELL_NAIVE_3
17.1
B_CELL_NAIVE_4
17.1
B_CELL_NAIVE_5
16.4
B_CELL_NAIVE_6
15.7
B_CELL_NAIVE_7
15.6
B_CELL_NAIVE_8
15.4
B_CELL_NAIVE_9
15.4
B_CELL_NAIVE_10
15.2
B_CELL_NAIVE_11
14.8
B_CELL_NAIVE_12
14.7
B_CELL_NAIVE_13
14.7
B_CELL_NAIVE_14
14.5
B_CELL_NAIVE_15
14.1
B_CELL_NAIVE_16
14.0
B_CELL_NAIVE_17
14.0
B_CELL_NAIVE_18
13.9
B_CELL_NAIVE_19
13.9
B_CELL_NAIVE_20
13.3
B_CELL_NAIVE_21
13.2
B_CELL_NAIVE_22
13.1
B_CELL_NAIVE_23
13.0
B_CELL_NAIVE_24
13.0
B_CELL_NAIVE_25
13.0
B_CELL_NAIVE_26
12.9
B_CELL_NAIVE_27
12.9
B_CELL_NAIVE_28
12.7
B_CELL_NAIVE_29
12.5
B_CELL_NAIVE_30
12.3
B_CELL_NAIVE_31
12.3
B_CELL_NAIVE_32
12.3
B_CELL_NAIVE_33
12.3
B_CELL_NAIVE_34
12.1
B_CELL_NAIVE_35
12.0
B_CELL_NAIVE_36
12.0
B_CELL_NAIVE_37
11.8
B_CELL_NAIVE_38
11.8
B_CELL_NAIVE_39
11.8
B_CELL_NAIVE_40
11.6
B_CELL_NAIVE_41
11.6
B_CELL_NAIVE_42
11.6
B_CELL_NAIVE_43
11.5
B_CELL_NAIVE_44
11.5
B_CELL_NAIVE_45
11.4
B_CELL_NAIVE_46
11.3
B_CELL_NAIVE_47
11.2
B_CELL_NAIVE_48
10.8
B_CELL_NAIVE_49
10.8
B_CELL_NAIVE_50
10.8
B_CELL_NAIVE_51
10.8
B_CELL_NAIVE_52
10.8
B_CELL_NAIVE_53
10.6
B_CELL_NAIVE_54
10.5
B_CELL_NAIVE_55
10.5
B_CELL_NAIVE_56
10.2
B_CELL_NAIVE_57
10.2
B_CELL_NAIVE_58
10.1
B_CELL_NAIVE_59
10.0
B_CELL_NAIVE_60
9.8
B_CELL_NAIVE_61
9.8
B_CELL_NAIVE_62
9.7
B_CELL_NAIVE_63
9.7
B_CELL_NAIVE_64
9.4
B_CELL_NAIVE_65
9.4
B_CELL_NAIVE_66
9.4
B_CELL_NAIVE_67
9.3
B_CELL_NAIVE_68
9.0
B_CELL_NAIVE_69
8.5
B_CELL_NAIVE_70
8.4
B_CELL_NAIVE_71
8.4
B_CELL_NAIVE_72
8.3
B_CELL_NAIVE_73
8.3
B_CELL_NAIVE_74
8.1
B_CELL_NAIVE_75
7.9
B_CELL_NAIVE_76
7.7
B_CELL_NAIVE_77
7.5
B_CELL_NAIVE_78
7.4
B_CELL_NAIVE_79
6.8
B_CELL_NAIVE_80
6.7
B_CELL_NAIVE_81
6.5
B_CELL_NAIVE_82
6.5
B_CELL_NAIVE_83
6.3
B_CELL_NAIVE_84
6.3
B_CELL_NAIVE_85
6.0
B_CELL_NAIVE_86
6.0
B_CELL_NAIVE_87
5.7
B_CELL_NAIVE_88
4.2
B_CELL_NAIVE_89
3.7
B_CELL_NAIVE_90
3.6
B_CELL_NAIVE_91
2.2
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