A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
59.8
nTPM
Monaco:
83.7
nTPM
Schmiedel:
38.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.8
HPA sample
nTPM
NK-cell nTPM: 59.8
Samples: 6
Max nTPM: 83.5
Min nTPM: 34.0
P10809_1013
34.0
P10809_1033
67.2
P10809_1052
55.7
P10809_1071
36.5
P10809_1093
81.6
P10809_1103
83.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
83.7
Monaco sample
nTPM
NK-cell nTPM: 83.7
Samples: 4
Max nTPM: 94.4
Min nTPM: 68.7
RHH5316_R3683
93.0
RHH5224_R3596
94.4
RHH5253_R3625
68.7
RHH5282_R3654
78.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.3
Schmiedel sample id
TPM
NK-cell TPM: 38.3
Samples: 90
Max TPM: 68.8
Min TPM: 16.0
NK_1
68.8
NK_2
60.0
NK_3
57.3
NK_4
55.5
NK_5
54.1
NK_6
52.1
NK_7
51.9
NK_8
51.6
NK_9
51.4
NK_10
50.4
NK_11
49.3
NK_12
48.5
NK_13
48.2
NK_14
47.4
NK_15
47.4
NK_16
47.3
NK_17
47.0
NK_18
46.5
NK_19
46.1
NK_20
45.8
NK_21
45.4
NK_22
45.3
NK_23
45.1
NK_24
44.4
NK_25
44.4
NK_26
44.0
NK_27
43.1
NK_28
43.0
NK_29
42.7
NK_30
41.6
NK_31
41.5
NK_32
41.5
NK_33
41.5
NK_34
41.2
NK_35
41.1
NK_36
40.5
NK_37
40.4
NK_38
39.5
NK_39
39.3
NK_40
39.1
NK_41
38.8
NK_42
38.6
NK_43
38.6
NK_44
38.6
NK_45
38.5
NK_46
38.5
NK_47
38.2
NK_48
38.1
NK_49
38.1
NK_50
37.3
NK_51
36.7
NK_52
36.6
NK_53
36.5
NK_54
36.4
NK_55
36.4
NK_56
36.1
NK_57
36.0
NK_58
35.5
NK_59
35.2
NK_60
35.1
NK_61
34.7
NK_62
34.5
NK_63
34.4
NK_64
33.6
NK_65
32.7
NK_66
31.9
NK_67
31.9
NK_68
31.2
NK_69
31.0
NK_70
30.3
NK_71
30.1
NK_72
29.7
NK_73
29.6
NK_74
29.2
NK_75
28.8
NK_76
28.7
NK_77
28.5
NK_78
27.9
NK_79
27.7
NK_80
25.6
NK_81
25.0
NK_82
24.9
NK_83
24.0
NK_84
23.6
NK_85
22.6
NK_86
22.0
NK_87
21.6
NK_88
20.0
NK_89
18.4
NK_90
16.0
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