A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
50.6
nTPM
Monaco:
63.4
nTPM
Schmiedel:
18.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
50.6
HPA sample
nTPM
Classical monocyte nTPM: 50.6
Samples: 6
Max nTPM: 61.0
Min nTPM: 37.5
P10809_1003
37.7
P10809_1020
60.8
P10809_1039
60.1
P10809_1058
37.5
P10809_1080
46.2
P10809_1107
61.0
Intermediate monocyte nTPM: 44.1
Samples: 6
Max nTPM: 53.2
Min nTPM: 37.1
P10809_1004
44.9
P10809_1023
42.1
P10809_1042
49.4
P10809_1061
37.1
P10809_1081
37.9
P10809_1108
53.2
Non-classical monocyte nTPM: 50.6
Samples: 5
Max nTPM: 73.4
Min nTPM: 38.1
P10809_1005
38.9
P10809_1053
51.6
P10809_1072
73.4
P10809_1082
38.1
P10809_1109
50.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
63.4
Monaco sample
nTPM
Classical monocyte nTPM: 63.4
Samples: 4
Max nTPM: 71.0
Min nTPM: 59.3
RHH5313_R3680
71.0
RHH5221_R3593
59.8
RHH5250_R3622
63.5
RHH5279_R3651
59.3
Intermediate monocyte nTPM: 62.9
Samples: 4
Max nTPM: 73.1
Min nTPM: 37.6
RHH5314_R3681
71.9
RHH5222_R3594
37.6
RHH5251_R3623
69.1
RHH5280_R3652
73.1
Non-classical monocyte nTPM: 59.7
Samples: 4
Max nTPM: 71.4
Min nTPM: 42.7
RHH5315_R3682
65.1
RHH5223_R3595
42.7
RHH5252_R3624
71.4
RHH5281_R3653
59.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.3
Schmiedel sample id
TPM
Classical monocyte TPM: 17.6
Samples: 91
Max TPM: 25.4
Min TPM: 10.6
MONOCYTES_1
25.4
MONOCYTES_2
23.2
MONOCYTES_3
23.1
MONOCYTES_4
22.4
MONOCYTES_5
22.3
MONOCYTES_6
22.3
MONOCYTES_7
22.2
MONOCYTES_8
22.1
MONOCYTES_9
22.1
MONOCYTES_10
22.0
MONOCYTES_11
22.0
MONOCYTES_12
21.5
MONOCYTES_13
21.4
MONOCYTES_14
21.4
MONOCYTES_15
21.3
MONOCYTES_16
21.3
MONOCYTES_17
21.2
MONOCYTES_18
20.8
MONOCYTES_19
20.7
MONOCYTES_20
20.6
MONOCYTES_21
20.5
MONOCYTES_22
20.4
MONOCYTES_23
20.3
MONOCYTES_24
20.2
MONOCYTES_25
20.1
MONOCYTES_26
20.1
MONOCYTES_27
19.9
MONOCYTES_28
19.7
MONOCYTES_29
19.7
MONOCYTES_30
19.5
MONOCYTES_31
19.3
MONOCYTES_32
19.1
MONOCYTES_33
19.0
MONOCYTES_34
19.0
MONOCYTES_35
18.8
MONOCYTES_36
18.6
MONOCYTES_37
18.6
MONOCYTES_38
18.5
MONOCYTES_39
18.4
MONOCYTES_40
18.4
MONOCYTES_41
18.4
MONOCYTES_42
18.3
MONOCYTES_43
18.0
MONOCYTES_44
17.8
MONOCYTES_45
17.8
MONOCYTES_46
17.6
MONOCYTES_47
17.6
MONOCYTES_48
17.6
MONOCYTES_49
17.5
MONOCYTES_50
17.5
MONOCYTES_51
17.5
MONOCYTES_52
17.4
MONOCYTES_53
17.3
MONOCYTES_54
17.3
MONOCYTES_55
16.9
MONOCYTES_56
16.8
MONOCYTES_57
16.7
MONOCYTES_58
16.7
MONOCYTES_59
16.6
MONOCYTES_60
16.5
MONOCYTES_61
16.4
MONOCYTES_62
16.2
MONOCYTES_63
16.2
MONOCYTES_64
16.1
MONOCYTES_65
16.0
MONOCYTES_66
15.9
MONOCYTES_67
15.7
MONOCYTES_68
15.5
MONOCYTES_69
15.4
MONOCYTES_70
14.5
MONOCYTES_71
14.4
MONOCYTES_72
14.2
MONOCYTES_73
14.1
MONOCYTES_74
13.8
MONOCYTES_75
13.7
MONOCYTES_76
13.6
MONOCYTES_77
13.5
MONOCYTES_78
13.4
MONOCYTES_79
13.4
MONOCYTES_80
13.3
MONOCYTES_81
13.2
MONOCYTES_82
12.6
MONOCYTES_83
12.4
MONOCYTES_84
12.2
MONOCYTES_85
12.1
MONOCYTES_86
11.9
MONOCYTES_87
11.8
MONOCYTES_88
11.3
MONOCYTES_89
11.3
MONOCYTES_90
10.7
MONOCYTES_91
10.6
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Non-classical monocyte TPM: 18.3
Samples: 90
Max TPM: 27.6
Min TPM: 9.1
M2_1
27.6
M2_2
26.1
M2_3
25.5
M2_4
25.4
M2_5
24.8
M2_6
24.7
M2_7
23.7
M2_8
23.5
M2_9
23.4
M2_10
23.4
M2_11
23.4
M2_12
23.3
M2_13
23.2
M2_14
23.0
M2_15
22.6
M2_16
22.5
M2_17
22.4
M2_18
22.4
M2_19
22.3
M2_20
21.9
M2_21
21.8
M2_22
21.5
M2_23
21.4
M2_24
21.3
M2_25
21.3
M2_26
21.3
M2_27
21.2
M2_28
21.1
M2_29
20.9
M2_30
20.5
M2_31
20.4
M2_32
20.4
M2_33
20.4
M2_34
20.4
M2_35
20.4
M2_36
20.3
M2_37
20.2
M2_38
19.8
M2_39
19.8
M2_40
19.4
M2_41
18.9
M2_42
18.8
M2_43
18.8
M2_44
18.7
M2_45
18.7
M2_46
18.3
M2_47
18.3
M2_48
18.1
M2_49
18.1
M2_50
18.1
M2_51
17.9
M2_52
17.8
M2_53
17.8
M2_54
17.8
M2_55
17.7
M2_56
17.2
M2_57
17.0
M2_58
16.7
M2_59
16.4
M2_60
16.2
M2_61
16.1
M2_62
16.1
M2_63
16.1
M2_64
16.0
M2_65
15.6
M2_66
15.6
M2_67
15.4
M2_68
15.2
M2_69
15.2
M2_70
15.1
M2_71
14.7
M2_72
14.7
M2_73
14.5
M2_74
14.3
M2_75
14.2
M2_76
13.7
M2_77
12.9
M2_78
12.8
M2_79
12.7
M2_80
12.3
M2_81
11.4
M2_82
11.4
M2_83
10.8
M2_84
10.8
M2_85
10.7
M2_86
10.4
M2_87
10.2
M2_88
9.9
M2_89
9.7
M2_90
9.1
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