MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.2 nTPM
HPA Brain:24.3 nTPM
GTEx:31.2 nTPM
FANTOM5:9.2 Scaled Tags Per Million
Pig:43.2 nTPM
Mouse:32.5 nTPM
Allen mouse:1.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 24.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.2
2411 Female, age 72, unknown 23.9
2219 Male, age 76, both hemispheres 18.1
1827 Male, age 72, unknown 17.6
2019 Male, age 18, unknown 17.0
1870 Female, age 42, unknown 16.1
1830 Male, age 51, unknown 15.3
2586 Male, age 75, left hemisphere 14.9
1833 Male, age 53, unknown 14.0
2828 Female, age 72, unknown 13.5
2666 Male, age 74, left hemisphere 11.3
Dorsal raphe nucleus
nTPM: 19.5
2298 Female, age 72, unknown 28.8
2047 Male, age 72, unknown 20.9
2750 Male, age 76, both hemispheres 19.9
1828 Male, age 53, unknown 17.0
2016 Female, age 72, unknown 10.8
Inferior colliculus
nTPM: 17.5
2097 Female, age 72, unknown 24.2
1848 Female, age 42, unknown 16.2
1890 Male, age 53, unknown 15.6
2849 Male, age 72, unknown 13.9
Median raphe nucleus
nTPM: 24.3
2220 Male, age 76, midline 24.3
Periaquaductal grey, anterior
nTPM: 16.7
1795 Male, age 51, unknown 20.3
1947 Male, age 18, unknown 15.8
2502 Female, age 75, unknown 14.2
Periaquaductal grey, dorsal
nTPM: 14.5
1840 Male, age 53, unknown 17.1
1831 Male, age 72, unknown 14.1
2850 Male, age 76, both hemispheres 13.8
2464 Female, age 72, unknown 13.0
Periaquaductal grey, lateral
nTPM: 14.9
2272 Male, age 74, both hemispheres 15.8
2140 Male, age 76, both hemispheres 14.8
2053 Male, age 18, unknown 14.2
Pretectal area
nTPM: 20.3
1817 Female, age 42, unknown 29.4
2007 Male, age 72, unknown 26.1
1815 Male, age 53, unknown 23.2
1816 Male, age 51, unknown 21.0
1944 Female, age 72, unknown 20.5
2224 Female, age 72, unknown 20.4
2667 Female, age 75, unknown 18.9
2316 Male, age 76, right hemisphere 17.9
2825 Male, age 18, unknown 16.9
2407 Male, age 75, both hemispheres 15.9
2273 Male, age 74, both hemispheres 13.3
Red nucleus
nTPM: 14.7
2588 Male, age 74, left hemisphere 19.0
2725 Female, age 75, unknown 18.4
2785 Male, age 18, unknown 18.4
1821 Female, age 72, unknown 16.9
2227 Male, age 72, unknown 15.3
2769 Male, age 72, unknown 14.2
2503 Female, age 72, unknown 13.6
1954 Female, age 42, unknown 13.5
2584 Male, age 75, left hemisphere 13.2
1904 Male, age 53, unknown 12.6
1865 Male, age 51, unknown 11.0
2823 Male, age 76, right hemisphere 10.9
Substantia nigra
nTPM: 17.6
1889 Female, age 72, unknown 26.4
1916 Female, age 42, unknown 23.5
1851 Male, age 51, unknown 19.1
1941 Male, age 53, unknown 17.9
2241 Male, age 72, unknown 16.9
2665 Male, age 74, both hemispheres 16.5
2409 Female, age 72, unknown 15.9
2699 Male, age 18, unknown 14.6
2583 Male, age 75, right hemisphere 13.0
2590 Female, age 75, unknown 12.3
Superior colliculus
nTPM: 15.9
2668 Female, age 75, unknown 21.0
1796 Male, age 53, unknown 18.5
2087 Female, age 72, unknown 18.1
2261 Male, age 18, unknown 17.5
1839 Male, age 51, unknown 15.8
2587 Male, age 74, left hemisphere 15.5
1895 Male, age 76, right hemisphere 15.1
2664 Male, age 75, both hemispheres 13.3
1913 Female, age 42, unknown 12.2
1995 Male, age 72, unknown 11.7
Ventral tegmental area
nTPM: 18.9
2410 Female, age 72, unknown 23.7
2218 Male, age 76, both hemispheres 20.0
1915 Female, age 42, unknown 19.1
1942 Male, age 51, unknown 17.6
2021 Male, age 53, unknown 17.2
2223 Female, age 72, unknown 15.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 31.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.2
Samples: 183

Max nTPM: 71.4
Min nTPM: 6.6
Std nTPM: 14.6
Median nTPM: 28.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 71.4
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 69.2
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 68.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 64.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 63.5
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 62.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 61.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 60.5
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 59.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 58.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 58.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 9.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.2
FF:10158-103A5 76 years, female 9.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 43.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.8
Samples: 4

Max nTPM: 53.0
Min nTPM: 16.2
Sample A Female 53.0
Sample B Female 26.1
Sample C Male 43.9
Sample D Male 16.2
Midbrain
nTPM: 40.2
Samples: 4

Max nTPM: 60.3
Min nTPM: 20.5
Sample A Female 20.5
Sample B Female 36.7
Sample C Male 60.3
Sample D Male 43.2
Periaqueductal gray
nTPM: 32.1
Samples: 3

Max nTPM: 40.9
Min nTPM: 27.7
Sample B Female 27.7
Sample C Male 40.9
Sample D Male 27.8
Superior colliculi
nTPM: 43.3
Samples: 4

Max nTPM: 51.7
Min nTPM: 30.6
Sample A Female 51.7
Sample B Female 30.6
Sample C Male 51.1
Sample D Male 39.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 32.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.5
Samples: 4

Max nTPM: 38.0
Min nTPM: 26.0
Sample A Male 38.0
Sample B Male 29.3
Sample C Female 26.0
Sample D Female 36.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
73617678 Antisense, RP_051130_02_D08, Mouse strain C57BL/6J (56 days, male) 1.6

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