A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.5
nTPM
Monaco:
43.7
nTPM
Schmiedel:
41.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.5
HPA sample
nTPM
Memory B-cell nTPM: 3.1
Samples: 6
Max nTPM: 6.3
Min nTPM: 1.5
P10809_1017
1.7
P10809_1025
3.7
P10809_1044
6.3
P10809_1063
1.5
P10809_1092
3.1
P10809_1105
2.4
Naive B-cell nTPM: 3.5
Samples: 6
Max nTPM: 4.9
Min nTPM: 2.5
P10809_1011
4.9
P10809_1029
3.6
P10809_1048
2.5
P10809_1067
3.1
P10809_1091
3.2
P10809_1104
3.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 28.4
Samples: 4
Max nTPM: 75.8
Min nTPM: 9.9
RHH5310_R3677
9.9
RHH5218_R3590
14.7
RHH5247_R3619
13.1
RHH5276_R3648
75.8
Naive B-cell nTPM: 42.6
Samples: 4
Max nTPM: 98.0
Min nTPM: 4.9
RHH5308_R3675
40.2
RHH5216_R3588
4.9
RHH5245_R3617
98.0
RHH5274_R3646
27.4
Non-switched memory B-cell nTPM: 35.6
Samples: 4
Max nTPM: 80.7
Min nTPM: 3.4
RHH5309_R3676
20.3
RHH5217_R3589
3.4
RHH5246_R3618
37.9
RHH5275_R3647
80.7
Plasmablast nTPM: 43.7
Samples: 4
Max nTPM: 66.0
Min nTPM: 3.9
RHH5312_R3679
3.9
RHH5220_R3592
66.0
RHH5249_R3621
51.8
RHH5278_R3650
53.1
Switched memory B-cell nTPM: 31.5
Samples: 4
Max nTPM: 68.0
Min nTPM: 1.9
RHH5311_R3678
1.9
RHH5219_R3591
50.8
RHH5248_R3620
5.4
RHH5277_R3649
68.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.4
Schmiedel sample id
TPM
Naive B-cell TPM: 41.4
Samples: 91
Max TPM: 70.3
Min TPM: 4.6
B_CELL_NAIVE_1
70.3
B_CELL_NAIVE_2
69.3
B_CELL_NAIVE_3
66.1
B_CELL_NAIVE_4
66.0
B_CELL_NAIVE_5
65.5
B_CELL_NAIVE_6
65.4
B_CELL_NAIVE_7
65.3
B_CELL_NAIVE_8
65.2
B_CELL_NAIVE_9
64.6
B_CELL_NAIVE_10
64.3
B_CELL_NAIVE_11
61.8
B_CELL_NAIVE_12
60.4
B_CELL_NAIVE_13
60.1
B_CELL_NAIVE_14
59.9
B_CELL_NAIVE_15
59.5
B_CELL_NAIVE_16
57.5
B_CELL_NAIVE_17
57.3
B_CELL_NAIVE_18
56.0
B_CELL_NAIVE_19
55.7
B_CELL_NAIVE_20
55.7
B_CELL_NAIVE_21
55.0
B_CELL_NAIVE_22
54.1
B_CELL_NAIVE_23
53.9
B_CELL_NAIVE_24
53.3
B_CELL_NAIVE_25
52.6
B_CELL_NAIVE_26
52.3
B_CELL_NAIVE_27
52.3
B_CELL_NAIVE_28
51.9
B_CELL_NAIVE_29
51.4
B_CELL_NAIVE_30
51.3
B_CELL_NAIVE_31
50.1
B_CELL_NAIVE_32
50.1
B_CELL_NAIVE_33
49.6
B_CELL_NAIVE_34
48.9
B_CELL_NAIVE_35
48.2
B_CELL_NAIVE_36
48.2
B_CELL_NAIVE_37
47.8
B_CELL_NAIVE_38
47.8
B_CELL_NAIVE_39
47.8
B_CELL_NAIVE_40
47.4
B_CELL_NAIVE_41
46.9
B_CELL_NAIVE_42
46.4
B_CELL_NAIVE_43
45.9
B_CELL_NAIVE_44
45.7
B_CELL_NAIVE_45
44.6
B_CELL_NAIVE_46
44.2
B_CELL_NAIVE_47
43.6
B_CELL_NAIVE_48
42.9
B_CELL_NAIVE_49
42.1
B_CELL_NAIVE_50
42.0
B_CELL_NAIVE_51
40.9
B_CELL_NAIVE_52
39.2
B_CELL_NAIVE_53
38.7
B_CELL_NAIVE_54
37.7
B_CELL_NAIVE_55
36.4
B_CELL_NAIVE_56
35.9
B_CELL_NAIVE_57
35.7
B_CELL_NAIVE_58
35.5
B_CELL_NAIVE_59
35.0
B_CELL_NAIVE_60
33.9
B_CELL_NAIVE_61
33.8
B_CELL_NAIVE_62
33.3
B_CELL_NAIVE_63
32.5
B_CELL_NAIVE_64
31.8
B_CELL_NAIVE_65
31.6
B_CELL_NAIVE_66
30.9
B_CELL_NAIVE_67
30.6
B_CELL_NAIVE_68
29.6
B_CELL_NAIVE_69
28.1
B_CELL_NAIVE_70
28.1
B_CELL_NAIVE_71
28.0
B_CELL_NAIVE_72
27.9
B_CELL_NAIVE_73
27.5
B_CELL_NAIVE_74
27.1
B_CELL_NAIVE_75
25.9
B_CELL_NAIVE_76
25.0
B_CELL_NAIVE_77
22.0
B_CELL_NAIVE_78
21.0
B_CELL_NAIVE_79
20.3
B_CELL_NAIVE_80
19.7
B_CELL_NAIVE_81
19.5
B_CELL_NAIVE_82
19.3
B_CELL_NAIVE_83
18.5
B_CELL_NAIVE_84
15.7
B_CELL_NAIVE_85
13.8
B_CELL_NAIVE_86
12.4
B_CELL_NAIVE_87
10.9
B_CELL_NAIVE_88
7.5
B_CELL_NAIVE_89
7.0
B_CELL_NAIVE_90
6.4
B_CELL_NAIVE_91
4.6
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