A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.8
nTPM
Monaco:
74.9
nTPM
Schmiedel:
84.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.8
HPA sample
nTPM
Classical monocyte nTPM: 2.3
Samples: 6
Max nTPM: 3.5
Min nTPM: 1.5
P10809_1003
2.1
P10809_1020
1.9
P10809_1039
3.4
P10809_1058
1.6
P10809_1080
1.5
P10809_1107
3.5
Intermediate monocyte nTPM: 4.7
Samples: 6
Max nTPM: 11.8
Min nTPM: 1.4
P10809_1004
7.3
P10809_1023
1.4
P10809_1042
4.3
P10809_1061
1.5
P10809_1081
1.9
P10809_1108
11.8
Non-classical monocyte nTPM: 12.8
Samples: 5
Max nTPM: 33.3
Min nTPM: 3.5
P10809_1005
33.3
P10809_1053
3.5
P10809_1072
8.4
P10809_1082
4.5
P10809_1109
14.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.9
Monaco sample
nTPM
Classical monocyte nTPM: 21.6
Samples: 4
Max nTPM: 72.8
Min nTPM: 1.7
RHH5313_R3680
6.0
RHH5221_R3593
72.8
RHH5250_R3622
1.7
RHH5279_R3651
6.0
Intermediate monocyte nTPM: 68.6
Samples: 4
Max nTPM: 163.7
Min nTPM: 10.9
RHH5314_R3681
53.1
RHH5222_R3594
163.7
RHH5251_R3623
46.6
RHH5280_R3652
10.9
Non-classical monocyte nTPM: 74.9
Samples: 4
Max nTPM: 142.4
Min nTPM: 7.3
RHH5315_R3682
141.6
RHH5223_R3595
8.1
RHH5252_R3624
142.4
RHH5281_R3653
7.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
84.2
Schmiedel sample id
TPM
Classical monocyte TPM: 28.8
Samples: 91
Max TPM: 50.8
Min TPM: 13.7
MONOCYTES_1
50.8
MONOCYTES_2
45.6
MONOCYTES_3
45.1
MONOCYTES_4
44.2
MONOCYTES_5
42.0
MONOCYTES_6
41.6
MONOCYTES_7
41.2
MONOCYTES_8
40.9
MONOCYTES_9
40.8
MONOCYTES_10
40.5
MONOCYTES_11
40.3
MONOCYTES_12
39.7
MONOCYTES_13
39.2
MONOCYTES_14
38.4
MONOCYTES_15
38.0
MONOCYTES_16
37.8
MONOCYTES_17
37.8
MONOCYTES_18
37.3
MONOCYTES_19
37.1
MONOCYTES_20
36.2
MONOCYTES_21
35.3
MONOCYTES_22
35.0
MONOCYTES_23
34.7
MONOCYTES_24
34.7
MONOCYTES_25
34.5
MONOCYTES_26
34.4
MONOCYTES_27
34.3
MONOCYTES_28
33.9
MONOCYTES_29
33.8
MONOCYTES_30
33.6
MONOCYTES_31
33.6
MONOCYTES_32
32.8
MONOCYTES_33
32.6
MONOCYTES_34
32.4
MONOCYTES_35
31.6
MONOCYTES_36
31.2
MONOCYTES_37
31.0
MONOCYTES_38
30.9
MONOCYTES_39
30.2
MONOCYTES_40
30.0
MONOCYTES_41
29.6
MONOCYTES_42
29.5
MONOCYTES_43
29.4
MONOCYTES_44
29.2
MONOCYTES_45
28.6
MONOCYTES_46
28.6
MONOCYTES_47
28.1
MONOCYTES_48
27.4
MONOCYTES_49
27.2
MONOCYTES_50
27.0
MONOCYTES_51
26.7
MONOCYTES_52
25.9
MONOCYTES_53
25.9
MONOCYTES_54
25.8
MONOCYTES_55
25.6
MONOCYTES_56
25.2
MONOCYTES_57
25.1
MONOCYTES_58
25.0
MONOCYTES_59
25.0
MONOCYTES_60
24.9
MONOCYTES_61
24.8
MONOCYTES_62
24.5
MONOCYTES_63
24.2
MONOCYTES_64
23.9
MONOCYTES_65
23.7
MONOCYTES_66
23.7
MONOCYTES_67
23.7
MONOCYTES_68
23.0
MONOCYTES_69
22.8
MONOCYTES_70
22.6
MONOCYTES_71
22.3
MONOCYTES_72
22.3
MONOCYTES_73
22.0
MONOCYTES_74
20.8
MONOCYTES_75
19.6
MONOCYTES_76
19.2
MONOCYTES_77
18.7
MONOCYTES_78
17.5
MONOCYTES_79
16.9
MONOCYTES_80
16.6
MONOCYTES_81
16.6
MONOCYTES_82
16.4
MONOCYTES_83
16.3
MONOCYTES_84
16.0
MONOCYTES_85
15.6
MONOCYTES_86
15.2
MONOCYTES_87
14.9
MONOCYTES_88
14.8
MONOCYTES_89
14.7
MONOCYTES_90
14.7
MONOCYTES_91
13.7
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Non-classical monocyte TPM: 84.2
Samples: 90
Max TPM: 165.7
Min TPM: 17.9
M2_1
165.7
M2_2
164.8
M2_3
155.1
M2_4
146.5
M2_5
146.1
M2_6
132.1
M2_7
127.2
M2_8
126.7
M2_9
124.8
M2_10
124.6
M2_11
123.7
M2_12
123.1
M2_13
122.0
M2_14
121.5
M2_15
112.8
M2_16
112.3
M2_17
112.1
M2_18
111.8
M2_19
111.1
M2_20
110.0
M2_21
108.3
M2_22
108.2
M2_23
106.2
M2_24
104.8
M2_25
103.6
M2_26
103.5
M2_27
102.9
M2_28
102.4
M2_29
102.0
M2_30
101.9
M2_31
101.8
M2_32
101.1
M2_33
100.2
M2_34
99.7
M2_35
99.0
M2_36
96.1
M2_37
95.7
M2_38
93.5
M2_39
91.2
M2_40
89.7
M2_41
88.8
M2_42
85.9
M2_43
85.6
M2_44
85.2
M2_45
84.7
M2_46
83.8
M2_47
82.2
M2_48
81.6
M2_49
81.4
M2_50
80.8
M2_51
78.7
M2_52
77.3
M2_53
76.4
M2_54
72.9
M2_55
70.0
M2_56
69.8
M2_57
69.5
M2_58
69.1
M2_59
68.8
M2_60
67.1
M2_61
67.0
M2_62
63.8
M2_63
63.7
M2_64
63.0
M2_65
60.4
M2_66
59.1
M2_67
58.8
M2_68
57.4
M2_69
57.1
M2_70
56.0
M2_71
54.8
M2_72
53.9
M2_73
52.6
M2_74
51.1
M2_75
47.9
M2_76
47.1
M2_77
45.4
M2_78
44.2
M2_79
44.1
M2_80
43.9
M2_81
43.5
M2_82
40.4
M2_83
38.1
M2_84
38.1
M2_85
37.3
M2_86
36.3
M2_87
33.7
M2_88
31.8
M2_89
24.4
M2_90
17.9
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